Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_H19
(921 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 0.97
10_08_0222 - 15983756-15984313 31 1.7
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.7
07_03_1136 + 24218601-24218734,24218769-24219906 30 2.3
12_01_0841 - 7873458-7874225 30 3.0
06_03_1506 + 30641428-30642168 30 3.0
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 29 3.9
11_06_0610 - 25449085-25453284 29 5.2
02_05_0149 + 26290236-26290880 29 6.9
10_08_0213 - 15912048-15912716 28 9.1
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 9.1
07_03_1751 - 29215074-29216270 28 9.1
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 31.5 bits (68), Expect = 0.97
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = -2
Query: 917 GGXXXXPGXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGG 753
GG G G GGGY G G G G R G G GG +GG
Sbjct: 68 GGGYGGGGGGYGGGGGGYGGGGRGGGGGGGYGGGGGGGRGGGGGGGGRGGGGRGG 122
>10_08_0222 - 15983756-15984313
Length = 185
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/72 (25%), Positives = 22/72 (30%)
Frame = -2
Query: 836 GXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDXXKXXXGXAXLXXGGXNFXXVXXGGGAX 657
G G G G GW G G GG+ G G G G+
Sbjct: 35 GGGGGGGSSGGGSGWGSGSGSGYGQAGGSGGAYASGGGGGGGSGGGANGGSGYGSGSGSG 94
Query: 656 WXXAXKXGPFYG 621
+ A GP+ G
Sbjct: 95 YGQAGSYGPYGG 106
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 1.7
Identities = 32/122 (26%), Positives = 34/122 (27%), Gaps = 1/122 (0%)
Frame = +1
Query: 556 PXNRGIPXEKPXX-PXGXQXXXNP*KGPXXXAFXQXAPPPXXTXXKFXPPXXRXANPXXX 732
P G P + P P G P G Q APPP PP P
Sbjct: 13 PPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPP--QGAPPPFLA-----PPPPPPPGPPPP 65
Query: 733 FXXSXXFPPXKXPPXXXPFXHPXRXPXXPXPXFXPLGXGGXXFX*PPPCXXFPXPGXXXX 912
F P PP P + P P P G PPP P P
Sbjct: 66 HQPQFNFGPG--PPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPP 123
Query: 913 PP 918
PP
Sbjct: 124 PP 125
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.3 bits (65), Expect = 2.3
Identities = 34/128 (26%), Positives = 36/128 (28%), Gaps = 9/128 (7%)
Frame = -3
Query: 919 GGXXXXXXXXGXPXXGGVXXXGPPXSPKGXXGGXGXXXXXXGG---------XKXGXXGX 767
GG G GG GPP P G GG G GG G G
Sbjct: 95 GGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154
Query: 766 XXRGETPGXXXXPXXGXPPXEXGXXILXXXXXGGXPFGKXPXXXALFTGXGPFXGXLGXK 587
PG G PP G GG G P G G G LG
Sbjct: 155 GALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRA---PGGGGGGGGLGGG 211
Query: 586 VFPGVSPD 563
G +P+
Sbjct: 212 GGEGGAPE 219
>12_01_0841 - 7873458-7874225
Length = 255
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -2
Query: 896 GXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGG 753
G G+ GGGY + G + G G G+ G GG GG
Sbjct: 133 GQGRGASGGGYGQGGGGGGGGGQGGGNGSGYGSGYGSGYGQGGGASGG 180
>06_03_1506 + 30641428-30642168
Length = 246
Score = 29.9 bits (64), Expect = 3.0
Identities = 27/110 (24%), Positives = 31/110 (28%), Gaps = 2/110 (1%)
Frame = -2
Query: 896 GXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGG--XXQGGNXXDXXKXXX 723
G G GGG + G G G G G+ G GG GG
Sbjct: 61 GFGNGGVGGGGYGGGGGYGSGGGEGNGAYGQGYGYGSGNGGGGGGGYGGGGGGSYGSGGM 120
Query: 722 GXAXLXXGGXNFXXVXXGGGAXWXXAXKXGPFYGXXXXXXPFGXXGFSXG 573
G G + GGG G YG FG G+ G
Sbjct: 121 GSGYGGGYGSGYDYGGQGGGGGHGGGGGGGSGYGNGGYGSGFG-EGYGSG 169
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 29.5 bits (63), Expect = 3.9
Identities = 28/110 (25%), Positives = 33/110 (30%), Gaps = 2/110 (1%)
Frame = +1
Query: 568 GIPXEKPXXPXGXQXXXNP*KGPXXXA--FXQXAPPPXXTXXKFXPPXXRXANPXXXFXX 741
G P P P G P +GP + Q APP P A +
Sbjct: 419 GQPPNYPPGP-GNYNSYGPSQGPNYGQPQYPQSAPPQNYGPGYGDPRYNAPAPNQQYYGQ 477
Query: 742 SXXFPPXKXPPXXXPFXHPXRXPXXPXPXFXPLGXGGXXFX*PPPCXXFP 891
P PP P+ P P P P G G + PPP P
Sbjct: 478 PPAGPQQGYPPQQDPYARPYGGPGQWAPRGAPAGDG--TYQAPPPTSYGP 525
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 5.2
Identities = 29/119 (24%), Positives = 33/119 (27%), Gaps = 4/119 (3%)
Frame = +1
Query: 574 PXEKPXXPXGXQXXXNP*KGPXXXAFXQXAPPPXXTXXKFXP---PXXRXANPXXXFXXS 744
P + P P P K P A PPP + P P +P
Sbjct: 1164 PIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVI 1223
Query: 745 XXFPPXKXPPXXXPFXHPXRXPXXPXPXFXPLGXGGXXFX*PPPC-XXFPXPGXXXXPP 918
PP K PP P P P P + PPP P P PP
Sbjct: 1224 LPPPPVKSPPPPAPVISPPPPEKSPPPAAPVILSPPAVKSLPPPAPVSLPPPPVKSLPP 1282
>02_05_0149 + 26290236-26290880
Length = 214
Score = 28.7 bits (61), Expect = 6.9
Identities = 29/100 (29%), Positives = 30/100 (30%), Gaps = 1/100 (1%)
Frame = -2
Query: 917 GGXXXXPGXGKXXX-GGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXD 741
GG G G+ GGGY F G G G G G G G GG
Sbjct: 105 GGGGGGGGSGRAYGFGGGYGGHPGGFGGGGGGGGGGGGRNYGGGSGGIGGYGNYGGGYNG 164
Query: 740 XXKXXXGXAXLXXGGXNFXXVXXGGGAXWXXAXKXGPFYG 621
G A GG GA W K G F G
Sbjct: 165 EPGGGGGGAG-EGGGYGGDYGGGDVGANW---SKRGSFRG 200
>10_08_0213 - 15912048-15912716
Length = 222
Score = 28.3 bits (60), Expect = 9.1
Identities = 26/99 (26%), Positives = 26/99 (26%)
Frame = -2
Query: 917 GGXXXXPGXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDX 738
GG G G G GY G G G G G GG QGG
Sbjct: 111 GGYGSGGGGGGGGAGSGYGSGEG---YGSGYGSGAGGASGGGGGHGGGGGGGQGGGYGSG 167
Query: 737 XKXXXGXAXLXXGGXNFXXVXXGGGAXWXXAXKXGPFYG 621
G GG GGG G YG
Sbjct: 168 SGYGSGRGYGQGGGAYGGGYASGGGGGGGGGQGGGSGYG 206
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 9.1
Identities = 22/79 (27%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Frame = +1
Query: 664 PPPXXTXXKFXPPXXRXANPXXXFXXSXXFP-PXKXPPXXXPFXHPXRXPXXPXPXFXPL 840
PPP PP P P P PP P P P P PL
Sbjct: 1129 PPPLPLDAPPPPPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSLPPPPPPPPL 1188
Query: 841 GXGGXXFX*PPPCXXFPXP 897
G PPP P P
Sbjct: 1189 PSGPPPQPAPPPLPIQPPP 1207
>07_03_1751 - 29215074-29216270
Length = 398
Score = 28.3 bits (60), Expect = 9.1
Identities = 23/79 (29%), Positives = 25/79 (31%)
Frame = -2
Query: 896 GXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDXXKXXXGX 717
G G GGG+ KG G G G + G G GG GG G
Sbjct: 307 GGGGAGAGGGFGGG-----KGGGFGGGFGGGKGGGVGGGAGGGFGGGGGAGAGGGFGGGK 361
Query: 716 AXLXXGGXNFXXVXXGGGA 660
GG GGGA
Sbjct: 362 GGGFGGGVGGGHGAGGGGA 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,761
Number of Sequences: 37544
Number of extensions: 268245
Number of successful extensions: 517
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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