Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_H19
(921 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.50
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.50
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 1.5
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 3.5
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 4.7
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 6.2
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 29 6.2
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 6.2
L23648-9|AAK95877.1| 466|Caenorhabditis elegans Prion-like-(q/n... 28 8.2
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.50
Identities = 27/89 (30%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Frame = +1
Query: 664 PPPXXTXXKFXPPXXRXANPXXXFXXSXX-FPPXKXPP---XXXPFXHPXRXPXXPXPXF 831
PPP T P P S +PP PP P P P P F
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 832 XPLGXGGXXFX*PPPCXXFPXPGXXXXPP 918
P G GG PPP PG PP
Sbjct: 326 GPPGMGGMP---PPPPPGMRYPGGMPPPP 351
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = +2
Query: 665 PPPXXPSQNSXPXFXGXXTPXGXXXX-PXXFPPXXXPXGPXLXPTXXXXXXXXXPXXPLW 841
PPP PS+ P G P P PP P P P P P
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 376
Query: 842 GXGGXXSXNPP 874
G G PP
Sbjct: 377 GHGMIPPPPPP 387
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.50
Identities = 27/89 (30%), Positives = 28/89 (31%), Gaps = 4/89 (4%)
Frame = +1
Query: 664 PPPXXTXXKFXPPXXRXANPXXXFXXSXX-FPPXKXPP---XXXPFXHPXRXPXXPXPXF 831
PPP T P P S +PP PP P P P P F
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 832 XPLGXGGXXFX*PPPCXXFPXPGXXXXPP 918
P G GG PPP PG PP
Sbjct: 336 GPPGMGGMP---PPPPPGMRYPGGMPPPP 361
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = +2
Query: 665 PPPXXPSQNSXPXFXGXXTPXGXXXX-PXXFPPXXXPXGPXLXPTXXXXXXXXXPXXPLW 841
PPP PS+ P G P P PP P P P P P
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPS 386
Query: 842 GXGGXXSXNPP 874
G G PP
Sbjct: 387 GHGMIPPPPPP 397
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/78 (29%), Positives = 23/78 (29%)
Frame = -2
Query: 896 GXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDXXKXXXGX 717
G G GGG PP P G G G G G GG GG G
Sbjct: 60 GGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119
Query: 716 AXLXXGGXNFXXVXXGGG 663
GG GGG
Sbjct: 120 GGGGCGGGGGGCGGGGGG 137
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/98 (25%), Positives = 26/98 (26%)
Frame = -2
Query: 917 GGXXXXPGXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDX 738
GG G G GGG G G G G G G GG GG
Sbjct: 105 GGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCG 164
Query: 737 XKXXXGXAXLXXGGXNFXXVXXGGGAXWXXAXKXGPFY 624
G GG + GGG G Y
Sbjct: 165 GGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGY 202
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/78 (29%), Positives = 23/78 (29%)
Frame = -2
Query: 896 GXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDXXKXXXGX 717
G G GGG PP P G G G G G GG GG G
Sbjct: 60 GGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119
Query: 716 AXLXXGGXNFXXVXXGGG 663
GG GGG
Sbjct: 120 GGGGCGGGGGGCGGGGGG 137
Score = 29.1 bits (62), Expect = 4.7
Identities = 25/98 (25%), Positives = 26/98 (26%)
Frame = -2
Query: 917 GGXXXXPGXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDX 738
GG G G GGG G G G G G G GG GG
Sbjct: 105 GGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCG 164
Query: 737 XKXXXGXAXLXXGGXNFXXVXXGGGAXWXXAXKXGPFY 624
G GG + GGG G Y
Sbjct: 165 GGGGGGCGGGSSGGGGYAVAPSGGGGCGGGGSSGGGGY 202
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/86 (26%), Positives = 27/86 (31%)
Frame = -2
Query: 920 WGGXXXXPGXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXD 741
WGG PG G+ G G+ +G G G G G GG +GG
Sbjct: 48 WGGGG--PGWGRGGGGSGWGGG-----RGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGG 100
Query: 740 XXKXXXGXAXLXXGGXNFXXVXXGGG 663
G GG GGG
Sbjct: 101 GGGRGGGGGGRGGGGGGGGGRGGGGG 126
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 29.1 bits (62), Expect = 4.7
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = -2
Query: 920 WGGXXXXPGXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGG 753
WGG G G+ G G PP G G G G G GG G
Sbjct: 125 WGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGGGRGGGGGRGGGGGGGAG 180
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 28.7 bits (61), Expect = 6.2
Identities = 26/99 (26%), Positives = 29/99 (29%)
Frame = -3
Query: 889 GXPXXGGVXXXGPPXSPKGXXGGXGXXXXXXGGXKXGXXGXXXRGETPGXXXXPXXGXPP 710
G P GV G P PKG G G G G G +PG P P
Sbjct: 139 GLPGPAGVP--GQP-GPKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPGSP 195
Query: 709 XEXGXXILXXXXXGGXPFGKXPXXXALFTGXGPFXGXLG 593
+ G G P + P G G G G
Sbjct: 196 GKSGQRGRGLPGPSGAPGPQGPPGAPGQPGSGNAPGPAG 234
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = -3
Query: 889 GXPXXGGVXXXGPPXSPKGXXGGXGXXXXXXGGXKXGXXGXXXRGETPGXXXXPXXGXPP 710
G GG GPP P G G G GG G G PG P P
Sbjct: 245 GKNAQGGSSRPGPP-GPAGPPGPPGNNGAPGGGYGVGPPGPPGPSGRPGAPGQPGPDGQP 303
Query: 709 XEXG 698
G
Sbjct: 304 GAPG 307
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 6.2
Identities = 29/117 (24%), Positives = 33/117 (28%)
Frame = -2
Query: 917 GGXXXXPGXGKXXXGGGYXKXXPPFPKGXKXGXGXXGXRXGWXKGXXXGGXXQGGNXXDX 738
GG G G GGG + G G G G G G GG GG
Sbjct: 141 GGGPGGYGMGGYGGGGGGGGDFGGYGGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGM 200
Query: 737 XKXXXGXAXLXXGGXNFXXVXXGGGAXWXXAXKXGPFYGXXXXXXPFGXXGFSXGIP 567
G + GG GG + + G YG G G G P
Sbjct: 201 GGGGYGGGGMGGGGYG-----GGGDGGYGPSGGYGGGYGPGGGYG-MGGGGGGGGCP 251
>L23648-9|AAK95877.1| 466|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 38
protein.
Length = 466
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/49 (26%), Positives = 18/49 (36%)
Frame = +1
Query: 772 PXXXPFXHPXRXPXXPXPXFXPLGXGGXXFX*PPPCXXFPXPGXXXXPP 918
P P +P + P P + P+ G P +P PG PP
Sbjct: 6 PPNYPPGNPNQPPPFPPTPYYPMYQAGMPMPYIPQSPQYPQPGPPGGPP 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,455,168
Number of Sequences: 27780
Number of extensions: 192597
Number of successful extensions: 376
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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