Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H09
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...   116   6e-27
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    31   0.22 
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    30   0.52 
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    27   2.7  

>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score =  116 bits (278), Expect = 6e-27
 Identities = 58/92 (63%), Positives = 62/92 (67%)
 Frame = +1

Query: 370 KPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNM 549
           KPRS              FS GPLSVL Q+VKN+ QVLINCRNNKKLL  VKAFDRH NM
Sbjct: 7   KPRSELSEIELARLEEYEFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNM 66

Query: 550 VLENVKEMWTEVPXTXXXXXXXAVNKDKFISK 645
           VLENVKEMWTE   T       A+NKD+FISK
Sbjct: 67  VLENVKEMWTEKKRTASGKKGKAINKDRFISK 98


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +1

Query: 478 VLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWT 579
           V +  R +++L G + A+D H NMVL + +E+ T
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVT 55


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 10/28 (35%), Positives = 22/28 (78%)
 Frame = +1

Query: 475 QVLINCRNNKKLLGXVKAFDRHCNMVLE 558
           +V++  R+ KKL+G +++FD+  N++L+
Sbjct: 23  KVIVVLRDGKKLIGILRSFDQFANLMLQ 50


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 442 SVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKE 570
           S+L  S   + ++       +++ G +K FD+  N+VL++V+E
Sbjct: 24  SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,064
Number of Sequences: 5004
Number of extensions: 48471
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)