Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H09
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184...   122   4e-28
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...    88   1e-17
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     36   0.044
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    31   1.2  
07_01_0479 + 3606663-3607448                                           31   1.2  
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    29   5.0  
08_01_0975 + 9819387-9821512,9821768-9821910,9822185-9822349,982...    29   6.7  

>05_03_0462 -
           14316486-14316602,14316689-14316793,14318406-14318486,
           14318593-14318610
          Length = 106

 Score =  122 bits (294), Expect = 4e-28
 Identities = 59/75 (78%), Positives = 62/75 (82%), Gaps = 1/75 (1%)
 Frame = +1

Query: 424 FSTGPLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEVPXT-XX 600
           FSTGPLSVL  SVKNNTQVLINCRNNKKLLG V+AFDRHCNMVLENV+EMWTEVP T   
Sbjct: 16  FSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKG 75

Query: 601 XXXXXAVNKDKFISK 645
                 VNKD+FISK
Sbjct: 76  KKKALPVNKDRFISK 90


>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 42/64 (65%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
 Frame = +1

Query: 457 SVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEVPXT-XXXXXXXAVNKDK 633
           S   + +VLINC+NNKKLLG V+AFD HCNMVLENV+EMWTEVP T         VNKD+
Sbjct: 377 SCLGDIKVLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEVPKTGKGKKKALPVNKDR 436

Query: 634 FISK 645
           FISK
Sbjct: 437 FISK 440


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 16/50 (32%), Positives = 34/50 (68%)
 Frame = +1

Query: 436 PLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEV 585
           PL ++  S+  + ++ +  R++++L G + A+D+H NM+L +V+E+ T V
Sbjct: 19  PLDLIRLSL--DERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV 66


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +1

Query: 427 STGPLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEM 573
           ST    ++TQ +K   Q+ +  + + ++ G +  FD + N+VL++ +E+
Sbjct: 3   STKVQRIMTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI 51


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 469 NTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKE 570
           N ++ +  ++ ++L+G   AFDRH N+VL + +E
Sbjct: 14  NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 472 TQVLINCRNNKKLLGXVKAFDRHCNMVLENVKE 570
           +++ +  + +K+L+G +  FD + NMVLE+V E
Sbjct: 90  SKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 122


>08_01_0975 +
           9819387-9821512,9821768-9821910,9822185-9822349,
           9822382-9822419
          Length = 823

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 578 VHISLTFSNTMLQCRSKAFTXPKS 507
           +H  L F  TMLQC    F  PKS
Sbjct: 563 LHTFLVFDTTMLQCSWSCFVPPKS 586


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,684,976
Number of Sequences: 37544
Number of extensions: 330583
Number of successful extensions: 711
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)