Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_H09
(900 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 128 4e-29
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 128 4e-29
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 128 4e-29
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 128 4e-29
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 37 0.11
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 37 0.11
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 37 0.11
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 37 0.11
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 37 0.11
BC014600-1|AAH14600.1| 55|Homo sapiens Unknown (protein for MG... 32 3.3
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 128 bits (308), Expect = 4e-29
Identities = 64/98 (65%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +1
Query: 355 MTSTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFD 534
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLG VKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 535 RHCNMVLENVKEMWTEVPXT-XXXXXXXAVNKDKFISK 645
RHCNMVLENVKEMWTEVP + VNKD++ISK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 128 bits (308), Expect = 4e-29
Identities = 64/98 (65%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +1
Query: 355 MTSTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFD 534
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLG VKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 535 RHCNMVLENVKEMWTEVPXT-XXXXXXXAVNKDKFISK 645
RHCNMVLENVKEMWTEVP + VNKD++ISK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 128 bits (308), Expect = 4e-29
Identities = 64/98 (65%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +1
Query: 355 MTSTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFD 534
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLG VKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 535 RHCNMVLENVKEMWTEVPXT-XXXXXXXAVNKDKFISK 645
RHCNMVLENVKEMWTEVP + VNKD++ISK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 128 bits (308), Expect = 4e-29
Identities = 64/98 (65%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Frame = +1
Query: 355 MTSTTKPRSXXXXXXXXXXXXXXFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFD 534
M+ KP+S F+TGPLSVLTQSVKNNTQVLINCRNNKKLLG VKAFD
Sbjct: 1 MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFD 60
Query: 535 RHCNMVLENVKEMWTEVPXT-XXXXXXXAVNKDKFISK 645
RHCNMVLENVKEMWTEVP + VNKD++ISK
Sbjct: 61 RHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISK 98
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.11
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = +1
Query: 436 PLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEV 585
PL ++ S+ + ++ + RN+++L G + A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.11
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = +1
Query: 436 PLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEV 585
PL ++ S+ + ++ + RN+++L G + A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.11
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = +1
Query: 436 PLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEV 585
PL ++ S+ + ++ + RN+++L G + A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.11
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = +1
Query: 436 PLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEV 585
PL ++ S+ + ++ + RN+++L G + A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 36.7 bits (81), Expect = 0.11
Identities = 16/50 (32%), Positives = 33/50 (66%)
Frame = +1
Query: 436 PLSVLTQSVKNNTQVLINCRNNKKLLGXVKAFDRHCNMVLENVKEMWTEV 585
PL ++ S+ + ++ + RN+++L G + A+D+H NM+L +V+E T +
Sbjct: 17 PLDLIRLSL--DERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
>BC014600-1|AAH14600.1| 55|Homo sapiens Unknown (protein for
MGC:26736) protein.
Length = 55
Score = 31.9 bits (69), Expect = 3.3
Identities = 20/37 (54%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 547 MVLENVKEMWTEVP----XTXXXXXXXAVNKDKFISK 645
MVLENVKEM TEVP NKD FISK
Sbjct: 1 MVLENVKEMCTEVPKGGNGGKGKKKSKPANKDHFISK 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,566,943
Number of Sequences: 237096
Number of extensions: 1891471
Number of successful extensions: 3983
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3983
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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