Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H09
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 609 LLSFASXRYLSPHFLNILQYHVTMPVESLH 520
           LLS    +Y++P     L+ H T  V +LH
Sbjct: 306 LLSVLGYKYITPLIQKHLKIHDTCGVHNLH 335


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 184 SFCLLFQVPDPVVVQIKELLLT 249
           S C+LF +  P  V IKEL++T
Sbjct: 219 SNCVLFALQTPDNVLIKELVVT 240


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 681 GLRSQESPRRNMFGDEFVFVYSFALLSFASXRYLSPHFLNILQYHVT 541
           G+  ++ PR  +FG        F  LS     ++SP    +L+Y ++
Sbjct: 595 GVVGKKMPRYCLFGHNVTLANKFESLSEPLRIHVSPTTYILLKYPIS 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,784
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)