Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H08
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.7  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   4.7  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   6.3  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   8.3  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = -3

Query: 561 KPGTVSSRTWDRYCLHCCSSLRSTDTLSPHGRCCKRC 451
           K G+  S    R  +H C + R       HGR C  C
Sbjct: 6   KSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSNC 42


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 315 ETAIPNPVAQNFFCRKIVQTIYHPHHDSE 401
           +  +PN   Q F    +V TIY P   SE
Sbjct: 137 QLVVPNNFQQMFIHHPVVDTIYSPEESSE 165


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 331 LGIAVSQWTTGIMIPRISGSISLTSRQAELLALLQLKH 218
           L  +++ WT+GI+  RI+  I ++S  +    LL+L +
Sbjct: 407 LEASINDWTSGILKNRITKGIKISSINSGATMLLKLHY 444


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 548 YRPGRGIGTVCTVAVVCEALTHYLRMVAVVNGVA 447
           YR    +GT+CTV  +  A +      ++V+G+A
Sbjct: 660 YRALMALGTLCTVPDIALAASQIYHAQSIVHGIA 693


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 483 LSPHGRCCKRCSTPYH 436
           L P G CCK CS+ +H
Sbjct: 146 LYPKGGCCKFCSSVHH 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,881
Number of Sequences: 5004
Number of extensions: 51058
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)