Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_H08
(890 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006... 29 6.6
02_05_0621 - 30417044-30417196,30417511-30417586,30418055-304181... 29 6.6
08_02_1458 - 27270834-27271320,27271752-27271961,27272627-272736... 28 8.7
05_04_0071 - 17649443-17649508,17649963-17650046,17650664-17650873 28 8.7
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 28 8.7
01_06_0923 + 33044283-33044433,33044826-33045242,33046209-330465... 28 8.7
>05_04_0224 -
19198722-19198835,19198947-19199436,19200478-19200641,
19202534-19202632,19204069-19204175,19204278-19204401,
19205113-19205242,19205314-19205433,19205861-19206002,
19207243-19207326,19207651-19207742,19207855-19207944,
19208057-19208136,19208312-19208451,19208587-19209067
Length = 818
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = +3
Query: 288 GIIIPVVHCETAIPNPVAQ---NFFCRKIVQTIYHPHH-DSEIRVTRNCAWVPGDK---- 443
G + P+V A P P N +I + HH D ++V + W G+K
Sbjct: 679 GEVFPLVVYAEACPPPEESHQPNSTRAQITLAVIEKHHNDLRVKVVKQMLWSDGEKYELQ 738
Query: 444 ECYTVYNSDHAEI 482
E Y + NS A++
Sbjct: 739 EIYGIVNSTEADV 751
>02_05_0621 -
30417044-30417196,30417511-30417586,30418055-30418157,
30418269-30418339,30418446-30418789,30419867-30420004,
30420089-30420151,30420392-30420489,30421049-30421179,
30422397-30422428
Length = 402
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -1
Query: 551 QYRPGRGIGTVCTVAVVCEALTHYLRMVAVVNGVALLIT---GDPGAVPGHADLGVVMRM 381
Q+R G T + + TH R+++ + +A I GDP GH+ L + +
Sbjct: 172 QFRVGYLEQTEVFQSTIPSLRTHACRIISAKSTLAARIDSIRGDPTGKAGHSLLEEICKK 231
Query: 380 INGLDDLPAEKVL 342
L +LP K+L
Sbjct: 232 TEKLQELPPAKIL 244
>08_02_1458 -
27270834-27271320,27271752-27271961,27272627-27273624,
27274099-27274195,27274278-27274393,27274465-27274590,
27275123-27275233,27275347-27275428,27275844-27275989,
27276457-27276650,27277277-27277388,27277869-27278001,
27278295-27278437,27278488-27278562,27278830-27278937,
27279072-27279197,27279752-27279836,27280358-27280440,
27280545-27280625,27280709-27280789,27281960-27282034,
27282112-27282498,27282902-27283036
Length = 1396
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 267 DIDPEMRGIIIPVVHCETAIPNPVAQN 347
D+D ++G+ V+HC IP P +N
Sbjct: 571 DLDATLKGLFQQVLHCLENIPKPQGEN 597
>05_04_0071 - 17649443-17649508,17649963-17650046,17650664-17650873
Length = 119
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 334 GLGIAVSQWTTGIMIPRISGSISLTS 257
GLG + S+ TT ++PR+ ISLT+
Sbjct: 87 GLGFSTSKLTTIEIVPRVENGISLTT 112
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 28.3 bits (60), Expect = 8.7
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 560 SQEQYRPGRGIGTVCTVA--VVCEALTHYLRMVAVVNGVALLITGDPGAVPGHADLGVVM 387
+QE+ + +G + T A V E + +A +NGVA+ G PG +P D +
Sbjct: 286 TQEEPQDDQGESSNTTPAGGVAGEPKKKKKKKLAELNGVAVAAAGKPGLLPAKVDHD-LK 344
Query: 386 RMINGLDDLP 357
++I+ L LP
Sbjct: 345 QVISELQSLP 354
>01_06_0923 + 33044283-33044433,33044826-33045242,33046209-33046538,
33046806-33046876,33047283-33047357,33047435-33047578,
33047645-33047816,33047933-33048616,33048711-33048767,
33048850-33048956,33049485-33049610,33050221-33050295,
33050387-33050499,33050789-33050905,33051384-33051444,
33051690-33051763,33052267-33052388,33052472-33052620,
33053525-33053635,33053946-33054008,33054689-33054722,
33055253-33055375,33055971-33056033,33056130-33056196,
33056311-33056356,33056446-33056552,33056923-33056971,
33057208-33057273,33057544-33057630
Length = 1286
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +1
Query: 391 TTPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPIPRPGR 546
T RS P P S ++ T + A RR Q ATV VP+P P R
Sbjct: 945 TAHRSPGPTCRPVSKYAKNPTGYVKAEARR----PEQLVATVTRVPLPSPER 992
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,591,869
Number of Sequences: 37544
Number of extensions: 329143
Number of successful extensions: 698
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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