Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H07
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    27   2.7  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   4.8  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   6.3  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   8.4  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    26   8.4  

>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 110 SPYLFWSSHPQRVXSINFFIKI 45
           SP+LFW S        NFFI +
Sbjct: 76  SPFLFWKSQSSEAWGRNFFIAV 97


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 170 FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 289
           F+T+ +T+   YPD+ +K      + ++ +  S   F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 179 LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 313
           +PK  T +  +  EK   EEEE  + L+   +   + +DH    P
Sbjct: 1   MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELP 45


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 206 PDLFEKSINEEEEHAKSLDESKKNF---RKY 289
           PDL E+S  +EE  + S  E K NF   RKY
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +2

Query: 242 EHAKSLDESKKNFRKYIDHNKSRPDIPSWFSI*SFI 349
           E+ +++D   ++F+K +  NKS+P   S+  +  F+
Sbjct: 569 ENVRTMDRFYQSFQKALSMNKSQPSCLSFSKLNDFV 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,240
Number of Sequences: 5004
Number of extensions: 30168
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)