Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H06
         (1237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.099
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   2.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
          Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect(2) = 0.099
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 39 PPPPPPPXG 13
          PPPPPPP G
Sbjct: 9  PPPPPPPPG 17



 Score = 25.4 bits (53), Expect(2) = 0.099
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 48 GXXPPPPPPP 19
          G  PPPPPPP
Sbjct: 7  GNPPPPPPPP 16


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect(2) = 0.10
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 39  PPPPPPPXG 13
           PPPPPPP G
Sbjct: 761 PPPPPPPPG 769



 Score = 25.4 bits (53), Expect(2) = 0.10
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 48  GXXPPPPPPP 19
           G  PPPPPPP
Sbjct: 759 GGPPPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 40  PPPPPPPSXXXXG 2
           PPPPPPPS    G
Sbjct: 311 PPPPPPPSRRNRG 323



 Score = 23.8 bits (49), Expect(2) = 2.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 85  PPXXXGSXTXHVXXXPPPPPPPS 17
           PP   GS    +   PPPPPP S
Sbjct: 325 PPIGNGSSNSSLP--PPPPPPRS 345



 Score = 22.6 bits (46), Expect(2) = 2.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 40  PPPPPPPSXXXXG 2
           PPPPPP S    G
Sbjct: 361 PPPPPPRSAPSTG 373


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.306    0.125    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,587
Number of Sequences: 5004
Number of extensions: 20813
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)