Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H06
         (1237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 40   PPPPPPPS 17
            PPPPPPPS
Sbjct: 1356 PPPPPPPS 1363



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 41   PPPPPPP 21
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 40   PPPPPPP 20
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 41   PPPPPPP 21
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 39   PPPPPPPXG 13
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 66   RXXXMXGXXPPPPPPP 19
            R   + G   PPPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 37  PPPPPPS 17
           PPPPPPS
Sbjct: 343 PPPPPPS 349



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 40  PPPPPPPS 17
           PPPPPP S
Sbjct: 343 PPPPPPSS 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.306    0.125    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,329
Number of Sequences: 438
Number of extensions: 3021
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42142113
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)