Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H05
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.40 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   3.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   3.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 582 DQSSARAKTFLSTAQVVDD-QVFAIVSDEKVIKELEAEDEDVVLFKNFEEKRVKY 743
           D S + A   +  AQ+V+  Q   I+S+++++ E +  D  V LFK F++++  Y
Sbjct: 389 DSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADC-DFVVKLFKTFKDRKYLY 442


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +3

Query: 603 KTFLSTAQVVDDQVFAIVSDEKVIKELEAEDEDVVLFKNFEEKRVKYEDEEITEDLLNAW 782
           + +     V D+ V + V  E ++K+    DE+     NF EK  +   + + +D     
Sbjct: 46  EVYNGNVNVEDENVQSYV--ECMMKKFNVVDEN----GNFNEKNTRDIVQAVLDDNETDQ 99

Query: 783 VFVQSMPTIVEFSHETASKIFGGKIKY 863
           + V+  P      H   SKIF   +KY
Sbjct: 100 LIVECSPISDANVHIKISKIFQCFMKY 126


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 263 RTMEHRIQLKCTPWLKLQFQS*LYS--KRAHFLQWALHLR 150
           RT E R+Q +   WL  Q +   Y   KR   L++ L+++
Sbjct: 30  RTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIK 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,412
Number of Sequences: 438
Number of extensions: 3733
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)