Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_H03
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.017
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.38
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.66
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.87
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 1.1
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 28 1.5
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.0
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 2.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 6.1
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 8.1
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 26 8.1
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 34.7 bits (76), Expect = 0.017
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSST--VIAPLT 666
VTP P S S PP +T T S P +++ S T + T +ST V +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 667 PSNTTGTLSPP 699
P++T+ T +PP
Sbjct: 361 PTSTSSTSTPP 371
Score = 33.5 bits (73), Expect = 0.040
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAP-LT 666
+TP P S S+P P T+ + S P T ST + + + S+T + P +
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 667 PSNTTGTLSPP 699
P++T+ T +PP
Sbjct: 307 PTSTSSTSTPP 317
Score = 32.3 bits (70), Expect = 0.093
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +1
Query: 499 PKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS- 672
P T + S P P T+ TS S PP NST + +T V + SST P S
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPPPPAST 322
Query: 673 NTTGTLSPP 699
++TGT S P
Sbjct: 323 SSTGTSSSP 331
Score = 30.7 bits (66), Expect = 0.28
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTV-IAPLTP 669
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 670 SNTTGT 687
++ T
Sbjct: 415 PTSSST 420
Score = 29.1 bits (62), Expect = 0.87
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTP 669
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 670 S 672
+
Sbjct: 250 T 250
Score = 29.1 bits (62), Expect = 0.87
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 484 LHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAP 660
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 661 LTPSNTTGTLS 693
T S++T T S
Sbjct: 658 STSSSSTATSS 668
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 490 SVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMT--VSSTVIAPL 663
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLST 389
Query: 664 TPSNTTGTLSPP 699
+ S TT T PP
Sbjct: 390 STSCTTSTSIPP 401
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 553 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 699
+T TS PP T+ ++ T ++T + P T NTT T +PP
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPP 111
Score = 29.9 bits (64), Expect = 0.50
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +1
Query: 487 HSVTPKTKPARKSPGSLPPCWKTTEF--TSRSCPPRT--NST*SSITRKVLVMTVSSTVI 654
H+ T T P S + TT T+ + PP T NST + + V T +TV+
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVV 134
Query: 655 APLTPSNTTGTLSPPXSKA 711
P T NTT T+ PP + A
Sbjct: 135 PPTTHVNTT-TVVPPTTHA 152
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 535 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 699
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPP 124
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 493 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPS 672
V P + + ++PP T+ T+ + PP T+ ++ T S+T + P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 673 NTTGTLSPP 699
T T+ PP
Sbjct: 128 VNTTTVVPP 136
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 575 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 474
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.87
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 219 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 362
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 707 FXHGGLKVPVVFEGVSGAITVDDTVIT 627
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 28.3 bits (60), Expect = 1.5
Identities = 35/132 (26%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
Frame = +3
Query: 453 KLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRV--YFKIMSTEDKQYLKLDNTKGS 626
K ID+ I +G K S+ F P E +R+ K++ ED LD K
Sbjct: 219 KDIDENEEVTINYGSEKGSAEFLFSYGFLPEPEGDRITNVMKLLIPEDSND-SLDLAKRR 277
Query: 627 SDDRIIYGDSTADTFKHHWYLEPSMXESDVMFFVYNRE--YNSVMTLDEXMGANEDREXX 800
S + +D+ W+ P + F V N E N M DE D E
Sbjct: 278 SCKTPPMIEFVSDSSGELWWHAPFL-----FFSVLNVEDFTNFKMVCDESKAQTVDWEFE 332
Query: 801 GHSGKVSGYPHL 836
G V P L
Sbjct: 333 GQKCSVEDLPKL 344
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 186 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 302
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 652 IAPLTPSNTTGTLSPPXSKA 711
+ PL PS+ +G LSPP KA
Sbjct: 146 VHPLRPSHVSGPLSPPEPKA 165
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 550 KTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPP 699
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S P
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAP 899
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 423 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 515
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/64 (28%), Positives = 27/64 (42%)
Frame = -3
Query: 223 VSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVSLILAQWLSLKASQQTTSN 44
+S++ T + C AST +LGA AL + T R K +I KA +
Sbjct: 312 ISHAGSLTNLSKCPASTVQILGAEKALFRALKT-RGNTPKYGIIYHSSFIGKAGAKNKGR 370
Query: 43 LKEF 32
+ F
Sbjct: 371 ISRF 374
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -3
Query: 322 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 143
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 142 EASAHTARTKA 110
+A A T A
Sbjct: 58 NGAAKEAATAA 68
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,641
Number of Sequences: 5004
Number of extensions: 73997
Number of successful extensions: 285
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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