Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H02
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1680 - 39123536-39123628,39123726-39123821,39123941-391240...    33   0.24 
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963...    31   1.7  
01_01_0027 - 205450-206029,206706-207276,207408-207836,208438-20...    31   1.7  
03_03_0040 - 13999040-13999179,13999524-13999638,13999759-139998...    29   3.8  
10_08_0100 + 14788426-14789097                                         29   6.7  
04_04_0318 + 24347364-24348826,24348920-24349048,24349158-243492...    29   6.7  

>01_06_1680 -
           39123536-39123628,39123726-39123821,39123941-39124093,
           39124273-39124382,39124601-39124757,39124867-39124877,
           39125138-39125228,39125401-39125496,39125605-39125724,
           39125914-39125978,39126066-39126168,39126406-39126631,
           39126714-39126790
          Length = 465

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +1

Query: 382 SIEGVPLAKIPHDWADYEPDNAGGDENCILMYPDGNFADVNCTDTFQYVCYKKKTSTVAM 561
           SI G  L   P D+ D EPD      + I+     N  D  C    + +C++KK  TV  
Sbjct: 347 SIYGKQLMIDPQDFQDAEPDILANSASEIINRIKEN--DDQCAMALRSLCHRKKGLTVEE 404

Query: 562 SSCGSVDS 585
           +S  S+DS
Sbjct: 405 ASLISIDS 412


>01_01_1197 -
           9630506-9630681,9630774-9630805,9630894-9630988,
           9631569-9631642,9631732-9631843,9631967-9632030,
           9632210-9632275,9632396-9632526,9632884-9633021,
           9633115-9633227,9633306-9633471,9633588-9633701,
           9633791-9633853,9633953-9634060,9634143-9634259,
           9634343-9634505,9634646-9634743,9634852-9634949,
           9635054-9635190,9635309-9635530,9635625-9635830,
           9636758-9636845,9638085-9638668
          Length = 1054

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 385 WNGSLLSRITHEYQCRCHTNSSYLLSKTACCFLKLRPEVKP 263
           W G L   I  + +C  +      L +T CC L++ P++ P
Sbjct: 83  WVGGLHRSIRRKCRCHVYRERGTTLGETNCCHLQVGPDLPP 123


>01_01_0027 -
           205450-206029,206706-207276,207408-207836,208438-208525
          Length = 555

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
 Frame = +1

Query: 517 FQYVCYKKKTSTVAMSSCGSVDSEYTLSKQTGNCYKFHKVPRTWSRAYMTCLAE-GGYLT 693
           F ++     T+T + S+    D  + ++     C+ +   P +W R+   C      +L 
Sbjct: 13  FFFILPASLTATASTSTSSCPDG-WQITPALDKCFIYIPTPLSWDRSEALCRNNFTAHLA 71

Query: 694 IINSQQEATFLKELFAKNPASHMVGRFWKDIAFIGLHDWNE 816
            ++S Q+    K L   +P+   VG    + A      W++
Sbjct: 72  ALSSLQDLNLAKSLCGPSPSGCWVGGHRNNTASAFAWKWSD 112


>03_03_0040 -
           13999040-13999179,13999524-13999638,13999759-13999818,
           14000007-14000060,14000274-14000333,14000418-14000480,
           14000552-14000595,14000671-14000755,14000904-14001028,
           14001368-14001432,14001460-14001518,14001678-14001743,
           14001870-14001935,14002019-14002105,14002168-14002257,
           14002378-14002440,14003153-14003419
          Length = 502

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 210 SSYLARGSIKMSFGRICIGFTSG 278
           S +LA+G I + FGRI +GF++G
Sbjct: 164 SLHLAKGVIMLYFGRILLGFSTG 186


>10_08_0100 + 14788426-14789097
          Length = 223

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 436 PDNAGGDENCILMYPDGNFADVNCTDTFQY 525
           P  AGG E C+  YP+G  A     D  Q+
Sbjct: 53  PFTAGGHEWCVDFYPNGKLAAAGDADMIQF 82


>04_04_0318 +
           24347364-24348826,24348920-24349048,24349158-24349293,
           24349447-24349535,24349631-24349742,24349836-24349942,
           24350033-24350129
          Length = 710

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 541 KTSTVAMSSCGSVD-SEYTLSKQTGNCYKFHK--VPRTWSRAYMTCLAEGGYLTIINSQQ 711
           KTS + +++ G +   ++ LS+Q G+  K +   V   W RA    L    Y T I+   
Sbjct: 491 KTSNLLLNNRGELKICDFGLSRQYGSPLKPYTQLVVTLWYRAPELLLGTKEYSTAIDMWS 550

Query: 712 EATFLKELFAKNP 750
               + EL AK P
Sbjct: 551 VGCIMAELLAKEP 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,348,996
Number of Sequences: 37544
Number of extensions: 501800
Number of successful extensions: 1183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)