Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H01
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    28   1.5  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    28   2.0  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.6  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.7  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   4.7  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    27   4.7  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   6.2  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = -1

Query: 370  IVKSIKRNFSAILQPKEAGLELSCR--ELWCKVERNLRVFPFLEVAQSTVNTGVNSDLVH 197
            I+ ++K  F +I   K   L+ + R   LW K   N  V   L V  STVN  +  D++ 
Sbjct: 1684 IIPAVKGFFKSIALSK-GNLQDTLRLLNLWFKFGNNSNVINTLNVGISTVNIDIWLDVIP 1742

Query: 196  STRAGVH 176
               A +H
Sbjct: 1743 QLIARIH 1749


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 194 TVNEVRIDPCVNSRLCHLKKGKNAKVSFDFTPQFSTTKLKTGLFGLKNGAEIPF 355
           T   +   PC+++ L  +     A+   +FT   +TT+   G  GL+ GA I F
Sbjct: 421 TYKSILSKPCISTGLGLVYATPAARFELNFTLPIATTEKDIGRKGLQFGAGIDF 474


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 228 LTQGSIRTSFTVHALASTSRHSLVVTTLNSARPQPRNAANNST 100
           L   ++ T+    A   TS HS+  T + S  P P  + N++T
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTT 81


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/56 (28%), Positives = 34/56 (60%)
 Frame = -2

Query: 225 TQGSIRTSFTVHALASTSRHSLVVTTLNSARPQPRNAANNSTRVESHVVHADASSS 58
           ++ S   S TV + +STS  S  +T+ +S+  +P +++++S+ + SH   + + SS
Sbjct: 362 SKSSSSFSSTVSSSSSTS--SSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSS 415


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +3

Query: 498 KTMRARCAATERMSGWFSKTAHILYSK 578
           KTM AR  ATE  S +FS +A  L SK
Sbjct: 505 KTMLARAVATESRSVFFSISASSLTSK 531


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 498 KTMRARCAATERMSGWFSKTAHILYSKH 581
           KTM AR  ATE  + +FS +A  L SK+
Sbjct: 425 KTMLARAVATEAKATFFSISASSLTSKY 452


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 346 FSAILQPKEAGLELSCRELWCKVERNLRVFPFLEVAQSTVNTGVN 212
           F  +LQ K AG  +S  +LW +      V P    A +T ++  N
Sbjct: 220 FEQVLQKKNAGFNVSITDLWGRALALKLVNPLTGGANTTFSSVTN 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,421
Number of Sequences: 5004
Number of extensions: 52138
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)