Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_H01
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432...    29   3.7  
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41...    29   4.9  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    29   6.5  
09_01_0019 + 403078-404211                                             28   8.6  

>05_06_0119 +
           25742277-25742434,25742976-25743061,25743146-25743223,
           25743919-25744031,25744094-25744171,25744941-25744949,
           25744981-25745082,25745165-25745714,25745941-25746146,
           25746868-25747031,25747157-25747310
          Length = 565

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -2

Query: 159 VVTTLNSARPQPRNAANNSTRVESHVVHADASSS 58
           V + L+   P P++ A+N + ++S + H+D+ SS
Sbjct: 260 VDSELDCGTPSPKSTASNHSAIDSRMCHSDSRSS 293


>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
          Length = 2177

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 353  FDALYNADACTLTSCPTEAGKTQTLDFTL 439
            F  LYN D   L + PT +GKT   +F +
Sbjct: 1370 FTVLYNTDDSVLVAAPTGSGKTICAEFAI 1398


>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
            30326409-30326798,30326896-30330060
          Length = 2144

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 353  FDALYNADACTLTSCPTEAGKTQTLDFTL 439
            F A YN+D   L + PT +GKT   +F +
Sbjct: 1339 FTASYNSDDSVLVAAPTGSGKTICAEFAI 1367


>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 377 RQHCKEHQKEFQRHSSTQRGRS 312
           R+H ++ +K+  RH S+ RGRS
Sbjct: 207 RKHSRDEEKKTSRHRSSSRGRS 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,827
Number of Sequences: 37544
Number of extensions: 336393
Number of successful extensions: 829
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)