Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_G17
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.7  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   2.7  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    27   4.7  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    27   4.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.1  
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    26   6.1  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    26   6.1  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   8.1  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -3

Query: 745 MKSPISSSLKPLMSTVLILTG 683
           ++SP SSS+ PL+  VL+LTG
Sbjct: 324 LESPSSSSVNPLVWIVLLLTG 344


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -2

Query: 416 PQLVHAGGRQRAHYHPQLLH*QQRAATGQGHAFRRHAVLASQVASLSERYSQ 261
           P +  +   +R+H   + +H QQ+      +  +   V A+ + +LS +YSQ
Sbjct: 98  PCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQHQHKNVAANSIDNLSRQYSQ 149


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +3

Query: 210 VEAAASLSDLHGRRHNYLRISLTERCNLRCKY 305
           ++ A  + ++H  +H +  +S T   ++RC+Y
Sbjct: 96  MDVAGKVLEIHEAKHGFYPLSETRTMHVRCRY 127


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 471 LKAIDGIRSVSM---TTNGLVLARRLASLQRAGLDAVNVSLDTLR 596
           L+ I  +RS+ M    T G++  ++   L+ AGL A N +LDT R
Sbjct: 132 LEIIKEVRSMDMEVCVTLGMLNEQQAKELKDAGLTAYNHNLDTSR 176


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 829 AAPTSXSLPANGMNSMNLTSRSRSRVISMKSPISSSLKPLMSTV 698
           ++ TS SL ++  +S   +S S S +IS  S  SSS     ST+
Sbjct: 247 SSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTI 290


>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 429 EPTLRSDLADIIQSLKAID--GIRSVSMT-TNGLVLARRLASLQRAGLDAVNVSLD 587
           E + RSDL D++   KA+D  G+  V +  T G    R++  L R     V+  ++
Sbjct: 167 EDSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCDIE 222


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 444 SDLADIIQSLKAIDGIRSVSMTTNGLVLARRLASLQRAGLDA 569
           S L  ++ S++ + G R+   +  GLVL   L+    AGLDA
Sbjct: 290 SQLTSMVSSVQKMKGFRTSVNSFVGLVLITLLSGAFVAGLDA 331


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 267 FAGSCVDDHVGRLMRPPPPHGCHHCTIY 184
           +AG  +DD +  +M  P P GC    ++
Sbjct: 240 YAGQIIDDEMHEIMVKPLPAGCRLTALF 267


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,873
Number of Sequences: 5004
Number of extensions: 50346
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)