Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_G16
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    34   0.031
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    30   0.38 
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    28   2.0  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    28   2.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.5  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   6.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.2  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 164 SELLATAFLVWLGVSSVVPYKGKEAVVLSHPA--FAFGFVVLGNAMAFGPTSGAHMNPAV 337
           +E L T  LV  GV S +          S  +  FA+GF  +      G  SG H+NPAV
Sbjct: 315 AEFLGTLVLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLGVYIAGGISGGHVNPAV 374

Query: 338 TLAAAL 355
           T++ A+
Sbjct: 375 TISLAI 380


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -3

Query: 351 AAASVTAGFMCAPDVGPNAIALPSTTNPK-AKAGCDSTTASFPLYGTTELTPSHT--RNA 181
           A++S+T+  + +  +  +++A  STT+   A +  +STT++ P    T  + S T   N+
Sbjct: 130 ASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASNS 189

Query: 180 VASSSEIQRSPPSPHPAGQTA 118
             SSS    S  S   A  T+
Sbjct: 190 ATSSSLASSSLNSTTSATATS 210


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 300 NAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSS 166
           N +   +T    A  G    T+S   YG+T  +  H RN++A S+
Sbjct: 513 NVVTTQTTHEEDALIGSSINTSSHQHYGSTLNSTPHRRNSIALSN 557


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/42 (38%), Positives = 27/42 (64%)
 Frame = -3

Query: 285 PSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVASSSEI 160
           PS+++  A +   STT+S  L  +T LT S + +AV+S++ I
Sbjct: 110 PSSSSSSAASSTTSTTSSSSLVSSTTLT-SSSPSAVSSTTSI 150


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/88 (17%), Positives = 44/88 (50%)
 Frame = -3

Query: 372 GDMRPCSAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSH 193
           G ++   +++SV++    +    P++ +  +TT+P + +   S+++S     ++  + S 
Sbjct: 121 GVLQTTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSS 180

Query: 192 TRNAVASSSEIQRSPPSPHPAGQTARRI 109
           + ++ +SSS    S  S   +  ++  +
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSSSSSSV 208



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/71 (21%), Positives = 39/71 (54%)
 Frame = -3

Query: 354 SAAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVA 175
           S+++S ++    +     ++ +  S+++  + +   S+++S P+  T+  + SH+ ++ +
Sbjct: 167 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI--TSSTSSSHSSSSSS 224

Query: 174 SSSEIQRSPPS 142
           SSS    S PS
Sbjct: 225 SSSSSSSSRPS 235


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 94  PSTDEDTPRGLSGWV 138
           P   +DTP+GLS W+
Sbjct: 567 PQASDDTPKGLSKWI 581


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/68 (25%), Positives = 38/68 (55%)
 Frame = -3

Query: 351 AAASVTAGFMCAPDVGPNAIALPSTTNPKAKAGCDSTTASFPLYGTTELTPSHTRNAVAS 172
           +++S+ + F     +  ++ + PS+T+    +   ST+++F    T+  +PS   ++++S
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSS--STSSTFSSASTS--SPSSISSSISS 620

Query: 171 SSEIQRSP 148
           SS I  SP
Sbjct: 621 SSTILSSP 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,286
Number of Sequences: 5004
Number of extensions: 40664
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)