Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_G15
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.6
01_01_1008 - 7987936-7988628,7988923-7989102 31 1.6
12_01_0816 + 7502669-7503145 29 4.9
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 29 4.9
12_02_0082 - 13372997-13373863,13373928-13374386 29 6.5
09_06_0323 - 22337217-22337450,22338263-22339204 29 6.5
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.5
01_01_1201 + 9678893-9679311,9679415-9679721 29 6.5
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.6
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 8.6
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +2
Query: 524 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRP--XPLTGYLSA 697
CWR + T D Q + +KD P + PSC L+F P PL L A
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLYA 342
Query: 698 F 700
F
Sbjct: 343 F 343
>01_01_1008 - 7987936-7988628,7988923-7989102
Length = 290
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 727 RKRHASRREKGGQVSGKRXGSEQESARGSFQGETPG 620
R R RR GG+V+G+ + RG+++GE G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEGEEEG 274
>12_01_0816 + 7502669-7503145
Length = 158
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 824 RRSGRAERGVRAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERR 693
R SG +R V PAW ER + ++ +V E+A ERR
Sbjct: 8 RSSGEGDRPVARWWPAWQEREKESLESSAVEGERATAEVGSERR 51
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 768 FAPSWAVCTNPPFSPTAAPYPVTIVLSQP 854
F P AV PP P AAP PV + + P
Sbjct: 67 FVPFHAVGPPPPPQPRAAPPPVAVAMGSP 95
>12_02_0082 - 13372997-13373863,13373928-13374386
Length = 441
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +2
Query: 647 SCALLFRPXPLTGYLSAFLPS 709
SCALLF P PL G LPS
Sbjct: 164 SCALLFSPMPLDGPTLGLLPS 184
>09_06_0323 - 22337217-22337450,22338263-22339204
Length = 391
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +2
Query: 590 GGETRQDYKDTRRFPLEAPSCALLFRPXPLTGYLSAFLPSGSVALSHSSRCRY 748
GGE ++ RRF AP ALL R L ++ + A++HS+RCR+
Sbjct: 166 GGEAAREL--ARRFAA-APRRALLSRREQLRAAPASPAAMAAAAVAHSTRCRF 215
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +2
Query: 356 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 511
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -3
Query: 757 RTEIPTA*AMRKRHASRREKGGQVSGKRXGSEQESAR---GSFQGETPG 620
R E A + HA+RR++ G G G+ QESAR G+ + + PG
Sbjct: 11 RAEAAAHRAADELHAARRDEPGGGGGGMLGTVQESARSLLGAVRDKIPG 59
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +2
Query: 305 NESAN---ARGEAVCVLGALPLPRSLTRCAR 388
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 28.3 bits (60), Expect = 8.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = +3
Query: 663 SDPXRLPDTCPPFSLREAWRFLIA-----HAVGISVRCRS 767
++ RL D C P L+E WRFL+A A S RC++
Sbjct: 845 TEEERLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKA 883
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,012,786
Number of Sequences: 37544
Number of extensions: 517826
Number of successful extensions: 1591
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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