Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_G10
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   4.7  
SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    27   4.7  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    26   8.1  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 767 RNTKARQVCIATSPLNIYEASIXXQSEPAKKK 862
           +N+K+R V + +SP N+   ++    +  KKK
Sbjct: 561 KNSKSRNVSVFSSPFNVPSFTVSSSDQVQKKK 592


>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = -3

Query: 753 LDSFVITTPIFKWL---DILTTRWQRYNNTTHLIFSRLFNFLDNSESL 619
           L++ +I     +W+   D + TR++   +T H+IF++  N  DN E++
Sbjct: 3   LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKIN--DNPENM 48


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 682 IPLPSCSQDVQPLENRCSNDKAIQVAPAQ 768
           +PLPS  ++ +PLE R  +D    +A  Q
Sbjct: 472 VPLPSEMKEAEPLEGRYPSDHVALMANVQ 500


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,209,575
Number of Sequences: 5004
Number of extensions: 63971
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)