Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_G07
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    98   1e-21
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    96   7e-21
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    29   0.66 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   1.1  
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac...    26   8.1  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 42/67 (62%), Positives = 53/67 (79%)
 Frame = +2

Query: 149 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 328
           I+KKRTK F RHQSDR+ ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 329 NGFRKVL 349
           NG +  L
Sbjct: 66  NGLKAFL 72



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 29/53 (54%), Positives = 42/53 (79%)
 Frame = +3

Query: 357 NVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQE 515
           NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RSQE
Sbjct: 75  NVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 95.9 bits (228), Expect = 7e-21
 Identities = 42/67 (62%), Positives = 52/67 (77%)
 Frame = +2

Query: 149 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 328
           IVKKRTK F RHQSD + ++  +WRKPRGID+ VRRRF+G   MP IGYG+NKKTR+ +P
Sbjct: 6   IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65

Query: 329 NGFRKVL 349
           NG +  L
Sbjct: 66  NGLKAFL 72



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 29/53 (54%), Positives = 42/53 (79%)
 Frame = +3

Query: 357 NVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQE 515
           NV ++E+L+M N+ Y AEIA  VS++KR  IVE+A+ L ++VTNA A++RSQE
Sbjct: 75  NVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRSQE 127


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -1

Query: 346 DLTESIWEHMTGLLVGTVTNVGHQVLTLEPPADSVVNTSRF-TPIPLKFV--IAIRLMPD 176
           D+ ++   H+ G+   T    G + +T     DS +    + TP+P+KFV  IA+  MP 
Sbjct: 387 DIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIAMHSMPR 444

Query: 175 KSLRP 161
            +LRP
Sbjct: 445 VALRP 449


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 518 ILLGAEASGRIRHSDAELLGSFHDQLPLLRRDTMSDLCAVL 396
           +L  ++   R+ HSD + + +F DQ   +RR  +  LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179


>SPAC1250.04c |atl1||alkyltransferase-like protein
           Atl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 100 SKRNIQDGYKTCLQADNRQKEDEEIYQASIG 192
           SKR+I  G +   Q D  ++E  EIYQ S+G
Sbjct: 67  SKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,733
Number of Sequences: 5004
Number of extensions: 45640
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)