Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_G04
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 216 2e-56
Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical pr... 29 4.4
AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear recep... 29 4.4
AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormo... 29 4.4
AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormo... 29 4.4
Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical pr... 29 5.8
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 216 bits (527), Expect = 2e-56
Identities = 99/168 (58%), Positives = 121/168 (72%)
Frame = +1
Query: 277 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQEL 456
A+ EQTR PR+V+V +Q+ I PT V EQ+ AI +V +I+ A G N+I QE
Sbjct: 63 AQKEQTRAPRLVRVAAIQNKIHRPTTDSVVEQRDAIHQRVGAMIEAAASAGANVIGLQEA 122
Query: 457 WNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNT 636
W MPFAFCTRE+ PW EFAES GPTT FL +LA+K+ +VI+S ILERDE+ D++WNT
Sbjct: 123 WTMPFAFCTRERLPWTEFAESVYTGPTTQFLSKLAVKHDIVIISPILERDEEKDDVIWNT 182
Query: 637 AVVISDTGNVIGKHRKNHIPRVGDXTXSNYYMEGNTGHPVFATRYGKI 780
AVVIS TG VIG+ RKNHIPRVGD S YYME GHPVF T+YG+I
Sbjct: 183 AVVISHTGRVIGRSRKNHIPRVGDFNESTYYMESTLGHPVFETKYGRI 230
Score = 55.6 bits (128), Expect = 4e-08
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = +2
Query: 776 RSRVNICFGRXHVLNWMMFGQNGAEIVFNPSAT 874
R +NIC+GR H NWMM+ NGAEI+FNPSAT
Sbjct: 229 RIGINICYGRHHPQNWMMYALNGAEIIFNPSAT 261
>Z92828-1|CAB07337.1| 512|Caenorhabditis elegans Hypothetical
protein C37A5.1 protein.
Length = 512
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 680 RCFPITFPVSLITTAVFQSMSECFSSLSNIEDT-ITIAYLMASSRRKVVV 534
+C P+TF ++ T + F+++ IE+T I IA L+ + V++
Sbjct: 75 KCVPLTFMLAFFVTIIVDRWKNMFANIGFIENTAIAIATLVKGTEGDVLL 124
>Z67880-1|CAA91794.1| 256|Caenorhabditis elegans Hypothetical
protein C34E7.3 protein.
Length = 256
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -2
Query: 554 SRRKVVVGPSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSWPATS 408
SR K+ +S+ + HG + +V+ AK F + +++ +TPS P T+
Sbjct: 197 SRMKIRKDSNSSKKEDMEHGDWWIVRVAKMGFESCFQRRRITPSPPPTN 245
>AY204196-1|AAO39199.1| 412|Caenorhabditis elegans nuclear receptor
NHR-110 protein.
Length = 412
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 828 IIQFKTWXRPKQMFTRDLAVSGRKYRMAGV 739
+++ K R K+MF R+L + KY++AGV
Sbjct: 365 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 394
>AC006777-2|AAK72308.3| 326|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform a protein.
Length = 326
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 828 IIQFKTWXRPKQMFTRDLAVSGRKYRMAGV 739
+++ K R K+MF R+L + KY++AGV
Sbjct: 279 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 308
>AC006777-1|ABB51174.1| 424|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 110, isoform b protein.
Length = 424
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 828 IIQFKTWXRPKQMFTRDLAVSGRKYRMAGV 739
+++ K R K+MF R+L + KY++AGV
Sbjct: 377 LLRIKQLMRVKEMFLRNLNIRMEKYKIAGV 406
>Z73098-4|CAD44145.1| 565|Caenorhabditis elegans Hypothetical
protein T21C9.3b protein.
Length = 565
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 376 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 510
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
>Z73098-3|CAD44144.1| 501|Caenorhabditis elegans Hypothetical
protein T21C9.3a protein.
Length = 501
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 376 KAIFNKVKKIIDVAGQEGVNIICFQELWNMP-FAFCTREKQPWCEF 510
K +F+ ++ D + +NI+ F E MP FC +Q W F
Sbjct: 46 KDVFDLFEEYFDYPKESDINIV-FNESMTMPNVTFCMSRQQAWSHF 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,361,727
Number of Sequences: 27780
Number of extensions: 412598
Number of successful extensions: 1187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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