Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_G03
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   6.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 18/55 (32%), Positives = 20/55 (36%)
 Frame = -1

Query: 677 PVPXPXPAXXLNFFXCLXPPXF*XPYXPPXXXXXPXPPPNXPPLXFX*GGXXXAP 513
           P+P P PA  +       PP    P  P      P PPP  PP     G    AP
Sbjct: 748 PIPVPPPAPIMG-----GPPP--PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 624 PPXFLXTLXPPXGXXXTXAPPQXPPVAXXLRRKXKXP 514
           PP       PP G      PP  PP     +RK K P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/44 (29%), Positives = 14/44 (31%)
 Frame = -3

Query: 630  PXPPXFLXTLXPPXGXXXTXAPPQXPPVAXXLRRKXKXPPXPNP 499
            P PP  L    PP     +  PP  PP            P P P
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 623  PPXF*XPYXPPXXXXXPXPPPNXPPL 546
            PP    P  PP     P PPP+ PP+
Sbjct: 1699 PPQMSAPTPPPPPMSVP-PPPSAPPM 1723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 974,754
Number of Sequences: 5004
Number of extensions: 10151
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)