Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_G03
         (944 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    32   0.52 
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   0.91 
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    31   0.91 

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -1

Query: 713 PNGKTPCXXXL-LPVPXPXPAXXLNFFXCLXPPXF*XPYXPPXXXXXPXPPPNXPP 549
           P    PC     +PV  P PA   N + C  PP    PY P      P P P   P
Sbjct: 64  PCANPPCIVVEPMPVAPPAPAPAYNPYPCATPPC-PLPYIPEPVAPVPAPAPVYEP 118


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -1

Query: 698 PCXXXLLPVPXPXPAXXLNFFXCLXPPXF*XPYXPPXXXXXPXPPPNXPP 549
           P     +P P P PA           P    P  PP     P PPP+ PP
Sbjct: 101 PYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPP 150


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 18/59 (30%), Positives = 21/59 (35%)
 Frame = -1

Query: 722 GXXPNGKTPCXXXLLPVPXPXPAXXLNFFXCLXPPXF*XPYXPPXXXXXPXPPPNXPPL 546
           G    G  PC     P+  P P        C  PP     + PP     P PPP  PP+
Sbjct: 21  GCCSMGPPPCPPPPPPMCAPPP------LPCPPPPICPPQFCPPPPMCPPPPPPPPPPM 73



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/42 (38%), Positives = 17/42 (40%)
 Frame = -1

Query: 677 PVPXPXPAXXLNFFXCLXPPXF*XPYXPPXXXXXPXPPPNXP 552
           P+P P P      F C  PP    P  PP     P PPP  P
Sbjct: 42  PLPCPPPPICPPQF-CPPPPMCPPPPPPPPPPMCPPPPPPMP 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,122,675
Number of Sequences: 27780
Number of extensions: 98174
Number of successful extensions: 493
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)