Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F24
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    28   2.1  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    27   2.8  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   8.4  

>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 363 DAAEERDVQHYDANRDDXDSRGEGVWRQEERD 268
           DA EE + +  D   ++ D  GEG   +EE D
Sbjct: 173 DADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -3

Query: 464 RL*AVMAAAISRMXTMLRITAKMLTKQVLSFRAPMQPKRETYSIMTPIAMTKIAGEKAYG 285
           R+ A+     S + ++  I      + +LSF    +P +  YS   PIA T+IA +  Y 
Sbjct: 529 RIDAISKFTHSYLKSLSEIILLKEKRAILSFLQLWEPFKSDYSQFLPIA-TRIANDHPYA 587

Query: 284 DR 279
            R
Sbjct: 588 QR 589


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 284 DRKKEMSWXIA*IVVPTEIVSADVRTK 204
           ++KK+    IA I++PT I++ ++R K
Sbjct: 279 EKKKDFDIPIALILIPTTIIAEELRRK 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,138
Number of Sequences: 5004
Number of extensions: 48449
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)