Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F20
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    62   1e-10
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    60   4e-10
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    56   7e-09
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   3.6  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    27   3.6  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    27   3.6  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    27   3.6  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   8.4  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 34/92 (36%), Positives = 47/92 (51%)
 Frame = +2

Query: 152 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 331
           + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGSG              
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGA--GAAPVAGGAAA 77

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SD+DMGFGLFD
Sbjct: 78  PAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 33/92 (35%), Positives = 46/92 (50%)
 Frame = +2

Query: 152 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 331
           + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ NIGS               
Sbjct: 20  IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAA-AAPAAGGAGAPA 78

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SD+DMGFGLFD
Sbjct: 79  AAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 31/92 (33%), Positives = 45/92 (48%)
 Frame = +2

Query: 152 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 331
           + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ NIGS               
Sbjct: 20  IEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSA--GAASAPTAAGAG 77

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SD+DMGFGLFD
Sbjct: 78  AAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 395 SDDDMGFGLFD 427
           SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 395 SDDDMGFGLFD 427
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 395 SDDDMGFGLFD 427
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = +2

Query: 395 SDDDMGFGLFD 427
           SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 119 THANSAFDTIFSFERASCRRHLAQA 45
           T + ++ D+ FS++R+ C+R L +A
Sbjct: 372 TESETSDDSSFSYKRSPCKRKLVEA 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,445
Number of Sequences: 5004
Number of extensions: 26709
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)