Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F20
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    69   7e-12
06_03_0962 + 26351861-26351899,26353304-26353530,26355183-263554...    28   8.8  
04_03_0343 + 14683782-14684222                                         28   8.8  
03_05_0012 + 19702264-19702459,19702478-19702572                       28   8.8  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 68.5 bits (160), Expect = 7e-12
 Identities = 38/92 (41%), Positives = 47/92 (51%)
 Frame = +2

Query: 152 LPVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXX 331
           +P+T EKI+T++KAA + VE YWPGLFAK LE  +V DLI ++GSG              
Sbjct: 20  IPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSG-GGAAPVAAAAAPA 78

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SDDDMGF LFD
Sbjct: 79  AGGGAAAAPAAEEKKEEAKEESDDDMGFSLFD 110


>06_03_0962 +
           26351861-26351899,26353304-26353530,26355183-26355421,
           26356276-26356495,26358093-26358214,26358428-26358729,
           26358776-26358883,26359314-26359376,26359415-26359621,
           26359702-26359812,26359899-26360228
          Length = 655

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 221 ANMALHLQPPLSRWWKFSHQLQATSSST 138
           A+ ALHL P  SR+    H  QAT + T
Sbjct: 141 AHRALHLGPLFSRYHSLHHSFQATQALT 168


>04_03_0343 + 14683782-14684222
          Length = 146

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 166 TSYRQHHHPPG 134
           T YR HHHPPG
Sbjct: 110 TGYRPHHHPPG 120


>03_05_0012 + 19702264-19702459,19702478-19702572
          Length = 96

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 121 YSALILVD--DDVACNW*ENFHH 183
           Y+A +LVD   D+A NW  N HH
Sbjct: 64  YAACVLVDGASDIAINWSGNMHH 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,182,943
Number of Sequences: 37544
Number of extensions: 199189
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)