Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F20
         (903 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic ri...    70   1e-11
CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.                70   1e-11
BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, larg...    70   1e-11
BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, larg...    70   1e-11
AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1 pr...    70   1e-11
CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.                68   5e-11
AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal phosph...    67   7e-11

>M17886-1|AAA36471.1|  114|Homo sapiens protein ( Human acidic
           ribosomal phosphoprotein P1 mRNA, complete cds. ).
          Length = 114

 Score = 69.7 bits (163), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +2

Query: 158 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 331
           VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                
Sbjct: 23  VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SDDDMGFGLFD
Sbjct: 83  STAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 91  MVSKAELACVYSALILVDDDV 153
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>CR450339-1|CAG29335.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 69.7 bits (163), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +2

Query: 158 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 331
           VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                
Sbjct: 23  VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SDDDMGFGLFD
Sbjct: 83  STAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 33.9 bits (74), Expect = 0.81
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +1

Query: 91  MVSKAELACVYSALILVDDDV 153
           M S +ELAC+YSAL+L DD+V
Sbjct: 1   MASVSELACIYSALVLHDDEV 21


>BC007590-1|AAH07590.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 69.7 bits (163), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +2

Query: 158 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 331
           VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                
Sbjct: 23  VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SDDDMGFGLFD
Sbjct: 83  STAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 91  MVSKAELACVYSALILVDDDV 153
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>BC003369-1|AAH03369.1|  114|Homo sapiens ribosomal protein, large,
           P1 protein.
          Length = 114

 Score = 69.7 bits (163), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +2

Query: 158 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 331
           VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                
Sbjct: 23  VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SDDDMGFGLFD
Sbjct: 83  STAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 91  MVSKAELACVYSALILVDDDV 153
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>AB061836-1|BAB79474.1|  114|Homo sapiens ribosomal protein P1
           protein.
          Length = 114

 Score = 69.7 bits (163), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +2

Query: 158 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 331
           VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                
Sbjct: 23  VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SDDDMGFGLFD
Sbjct: 83  STAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 91  MVSKAELACVYSALILVDDDV 153
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


>CR542209-1|CAG47005.1|  114|Homo sapiens RPLP1 protein.
          Length = 114

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
 Frame = +2

Query: 158 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 331
           VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI ++G+G                
Sbjct: 23  VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICDVGAGGPAPAAGAAPAGGPAP 82

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 427
                                SDDDMGFGLFD
Sbjct: 83  STAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>AY303789-1|AAP68820.1|  113|Homo sapiens acidic ribosomal
           phosphoprotein P1 protein.
          Length = 113

 Score = 67.3 bits (157), Expect = 7e-11
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
 Frame = +2

Query: 158 VTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSG--VXXXXXXXXXXXXX 331
           VT +KI+ ++KAA V+VEP+WPGLFAKAL  +N+  LI N+G+G                
Sbjct: 23  VTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAP 82

Query: 332 XXXXXXXXXXXXXXXXXXXXXSDDDMGFGLF 424
                                SDDDMGFGLF
Sbjct: 83  STAAAPAEEKKVEAKKEESEESDDDMGFGLF 113



 Score = 34.3 bits (75), Expect = 0.61
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +1

Query: 91  MVSKAELACVYSALILVDDDV 153
           M S +ELAC+YSALIL DD+V
Sbjct: 1   MASVSELACIYSALILHDDEV 21


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,383,970
Number of Sequences: 237096
Number of extensions: 1021811
Number of successful extensions: 1635
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)