Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F17
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    32   0.53 
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    29   6.6  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   8.7  
06_03_0522 - 21726317-21726634,21727202-21727654,21727771-217280...    28   8.7  

>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 451 ETFYKTACFARVHLNQGQFLYAF-YIAVIQRSDCHGFRCS 567
           ETF+ TAC  R HL QG+ + A+ Y+   +  DC GF  S
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GFSWS 465


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +3

Query: 468 CLFCACASQSRSILVCLLHRCYPA 539
           CLFC     SR ILVC L RC  A
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVA 81


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 676  LSCGFRINEAILHLCYVNFLQHFHIHKHFRVYFIR 572
            L  GFR++ A+ +LC + +L+   I K  R   IR
Sbjct: 1002 LKAGFRLSSALFYLCNILWLRAVKIRKKLRRQGIR 1036


>06_03_0522 -
           21726317-21726634,21727202-21727654,21727771-21728025,
           21728109-21728249,21728404-21728565,21728660-21728820,
           21731598-21731733
          Length = 541

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 730 VRIIGFVNEVVVFLVNAILSCGFRINEAILHLC 632
           V I+G +N+  +FL   +LSC  R+ + I  +C
Sbjct: 350 VGILGIINQSFLFLAFFLLSCQERLYQEIREVC 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,202,266
Number of Sequences: 37544
Number of extensions: 371470
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)