Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F16
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    29   3.2  
AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical...    29   4.2  
U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily ass...    28   7.4  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    28   9.8  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 756 TPNXRYLQREL*ESATLPEGRKADRYPVSGQGRNRRAHEGAS 631
           T     +QRE  E   +PEG+KA R P S +  + +++EG S
Sbjct: 71  TQKLEKMQREQMERLQVPEGQKA-RTPESAEAESPKSNEGPS 111


>AC024843-12|AAF60833.3|  986|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.10 protein.
          Length = 986

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 591 KPDRTIKIPGVSPWKLPRALSCSDPARLPDTCPPFSLREAWRFLIAHAVGI 743
           K   +I +PGV   ++    S  DP  LPD     +L E  R + A   G+
Sbjct: 220 KNHSSIHVPGVGDMRISNVTSLPDPCPLPDEIKKRALNEKERKVYAPFSGL 270


>U41993-7|AAA83450.2|  733|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 153, isoform b protein.
          Length = 733

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +1

Query: 562 KNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPAYR 678
           K  RSS  WR   G  R+ A  P  ++     P LP  R
Sbjct: 82  KGGRSSSNWRTTRGNGRHVAADPKFTITSEDFPALPGVR 120


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 721 RKRHASRREKGGQVSGKRAGSEQESARGSFQ 629
           +K  A+++  GG  SG  +GS+Q+ A G+ Q
Sbjct: 747 KKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQ 777


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 721 RKRHASRREKGGQVSGKRAGSEQESARGSFQ 629
           +K  A+++  GG  SG  +GS+Q+ A G+ Q
Sbjct: 625 KKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQ 655


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,334,250
Number of Sequences: 27780
Number of extensions: 387125
Number of successful extensions: 1014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)