Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F16
         (858 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.3  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   8.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   8.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 292 EKTSHTSTLNLKHKMNAIVVV 230
           E    T TLNLKH   A++V+
Sbjct: 56  EDAEDTQTLNLKHLRAAVLVL 76


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 794 PPGSAXTXAPYPGNYP 841
           P G     APYP N+P
Sbjct: 87  PSGQNKAVAPYPPNHP 102


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 794 PPGSAXTXAPYPGNYP 841
           P G     APYP N+P
Sbjct: 87  PSGQNKAVAPYPPNHP 102


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 611 DTRRFPLEAPSCALLFRPC 667
           + R FP++  SC L+   C
Sbjct: 165 ELRNFPMDRQSCPLILGSC 183


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 705 PEGRKADRYPVSGQGRNRRAHEG 637
           P G     Y +SG G+   A+EG
Sbjct: 28  PLGAIKGYYKISGNGKQYEAYEG 50


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 292 EKTSHTSTLNLKHKM 248
           ++  H+STL++ HKM
Sbjct: 238 DENRHSSTLDIDHKM 252


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 705 PEGRKADRYPVSGQGRNRRAHEG 637
           P G     Y +SG G+   A+EG
Sbjct: 28  PLGAIKGYYKISGNGKQYEAYEG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,673
Number of Sequences: 438
Number of extensions: 5865
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)