Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F15
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726...    53   3e-07
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264...    52   6e-07
01_06_0302 - 28318910-28318999,28319118-28319210,28319303-283193...    29   5.1  

>07_01_0875 -
           7265529-7265588,7265681-7265746,7266008-7266293,
           7267138-7267142
          Length = 138

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 23/44 (52%), Positives = 31/44 (70%)
 Frame = +3

Query: 342 HLSRLTTTKSLENGLVSARIXKDGKARKIVGCSCVVIKDFGEET 473
           HL  + + K+L       +I  +GKARK+VGCSCVV+KDFGEE+
Sbjct: 82  HLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEES 125



 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +2

Query: 317 LCATKHQXPLVKVDNNKKLGEWAGLCK 397
           LCA +H   LV V + K LGEWAGLCK
Sbjct: 75  LCA-EHNVHLVTVPSAKTLGEWAGLCK 100



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 265 CVLAEHCXXAAYKQLVQALCNE 330
           CVLAE C    Y +LV+ALC E
Sbjct: 57  CVLAEDCDQPDYVKLVKALCAE 78


>07_01_0360 +
           2646279-2646283,2647113-2647398,2648043-2648108,
           2648199-2648258
          Length = 138

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 22/44 (50%), Positives = 31/44 (70%)
 Frame = +3

Query: 342 HLSRLTTTKSLENGLVSARIXKDGKARKIVGCSCVVIKDFGEET 473
           HL  + + K+L       +I  +GKARK+VGCSCVV+KD+GEE+
Sbjct: 82  HLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGEES 125



 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +2

Query: 317 LCATKHQXPLVKVDNNKKLGEWAGLCK 397
           LCA +H   LV V + K LGEWAGLCK
Sbjct: 75  LCA-EHNVHLVTVPSAKTLGEWAGLCK 100



 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 265 CVLAEHCXXAAYKQLVQALCNE 330
           CVLAE C    Y +LV+ALC E
Sbjct: 57  CVLAEDCDQPDYVKLVKALCAE 78


>01_06_0302 -
           28318910-28318999,28319118-28319210,28319303-28319383,
           28319483-28319633,28319716-28319783,28319989-28320143,
           28320268-28320326,28320649-28320899
          Length = 315

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 208 LCTVFTQPLKLLXSGKQYXCVLAEHCXXAAYKQLVQALCNETSXSTC 348
           L  + TQ + LL    +Y   L  HC   A+   +Q  CNE   + C
Sbjct: 107 LPAILTQQISLL---SEYLLELVCHCLQYAHHACIQRWCNEKGDTVC 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,471,442
Number of Sequences: 37544
Number of extensions: 211999
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)