Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F15
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    37   0.017
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    29   6.0  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 37.1 bits (82), Expect = 0.017
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +2

Query: 317 LCATKHQXPLVKVDNNKKLGEWAGLCK 397
           LCA +HQ PL+KV + K +GE+ GLCK
Sbjct: 76  LCA-EHQIPLIKVADKKIIGEYCGLCK 101



 Score = 34.7 bits (76), Expect = 0.092
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +3

Query: 405 KDGKARKIVGCSCVVIKDFGEE 470
           K+GKARK+VGCS  V+ ++G E
Sbjct: 104 KEGKARKVVGCSSAVVTNWGNE 125



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 235 KLLXSGKQYXCVLAEHCXXAAYKQLVQALCNE 330
           K L   + + CVLAE+C    Y +LV+ LC E
Sbjct: 48  KALDKREAHFCVLAENCDEPQYVKLVETLCAE 79


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 375 ENGLVSARIXKDGKARKIVGCSCVVIKDFGEETP 476
           +NG V  +  K+ K +K+     + ++DF EETP
Sbjct: 483 KNGEVLVKGTKEWKEKKVEAAKSIKLEDFKEETP 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,179
Number of Sequences: 27780
Number of extensions: 184868
Number of successful extensions: 342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)