Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F11
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    59   9e-10
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   4.6  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    26   6.1  

>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 24/95 (25%), Positives = 54/95 (56%)
 Frame = +1

Query: 565 ITYVPPLNDKKILILLNPKSGPGKARELFQTKVAPILQEAEVPYDLHVTKYAQFAREFVR 744
           + Y      ++ ++ +NP  G GKA+ +++++  P+   A    ++ +T+    A+   +
Sbjct: 97  VAYKGIKRSRRFIVFINPHGGKGKAKHIWESEAEPVFSSAHSICEVVLTRRKDHAKSIAK 156

Query: 745 TRNVYAWRTIVAVGGDXVLFEILNGMFERLDWQQA 849
             +V ++  I++VGGD +  E++NG+ ER D+ +A
Sbjct: 157 NLDVGSYDGILSVGGDGLFHEVINGLGERDDYLEA 191


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 764 GVLLWRWVETVCCLKSLMVCLSAWIGNKHCRRXSR 868
           G + WR+    C  +S+++  S ++ +KH    SR
Sbjct: 88  GTIRWRYHSVPCVQRSMIILYSCFLCSKHAVLISR 122


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 538 IKCLIAGQPITYVPPLNDKKILILLNPKS 624
           IK +   QP+ Y+P    K IL LLNP S
Sbjct: 373 IKQIPTLQPLRYIPEGAKKIILSLLNPDS 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,457,864
Number of Sequences: 5004
Number of extensions: 70438
Number of successful extensions: 178
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)