Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F11
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    28   0.098
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.52 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 0.098
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 617 QNPDLGRLENCFRPRWLRYYKKRKCRMTFMSLNMLNL 727
           QN +LG +   + PR+   Y   KC  T  S + +NL
Sbjct: 46  QNLNLGEIYYIYNPRYPLPYSGSKCTWTITSYHRINL 82


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 460 TTITLRF-RSFDKYEDNNREAQKWRTFIKCLIA 555
           + +T +F R+ D+Y +N+ + +KW   I  L A
Sbjct: 361 SNVTPKFPRNIDEYNNNDLDTKKWNNKISALRA 393


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 393 NVIFVQIATVLLHNF*LLRTHQRTADTRASS 301
           N I   +A+ ++    +L  H R ADT   S
Sbjct: 299 NCIMFMVASSVVSTILILNYHHRNADTHEMS 329


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 651 KQFSSLPRSGFWIEKYKYFLIV 586
           K+  +LP  G W  K ++ L V
Sbjct: 11  KEIKTLPDRGMWSSKIEFILSV 32


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 651 KQFSSLPRSGFWIEKYKYFLIV 586
           K+  +LP  G W  K ++ L V
Sbjct: 64  KEIKTLPDRGMWSSKIEFILSV 85


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,625
Number of Sequences: 438
Number of extensions: 5777
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)