Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_F07
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1098 - 30395704-30395837,30396644-30396751,30396933-303971... 46 5e-05
08_02_1381 - 26551920-26552053,26552963-26553070,26553154-265533... 39 0.006
09_04_0676 - 19383757-19383890,19384308-19384415,19384493-193846... 38 0.014
03_06_0022 + 31085819-31086305,31086448-31087334 30 2.8
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 29 4.8
05_01_0321 + 2535201-2535260,2535366-2535700,2535705-2535849,253... 28 8.5
04_01_0359 + 4711289-4713052,4713423-4713950 28 8.5
>03_05_1098 -
30395704-30395837,30396644-30396751,30396933-30397119,
30398127-30398330
Length = 210
Score = 45.6 bits (103), Expect = 5e-05
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Frame = +3
Query: 333 VRHPNGKIVHPYEWRQSAEYADQSSSGGYYAVCIDNQFSRFAGKLVNLYLSVIRYDMWEK 512
V P G V+ + + ++ ++ GG Y C N + A + V+ Y+ V
Sbjct: 69 VTSPGGNTVYTLKGKSGDKFEFKAPRGGMYKFCFHNPYG--APETVSFYIHVGHIPNEHN 126
Query: 513 YAKEVEELD-MNIKNFTSSIQFVERNINDILQYQYHSRARESRDYNLLLDNNIYVLRWSI 689
AK+ E LD +N+K I ++ + + Q + +ARE+R + V+ ++I
Sbjct: 127 LAKD-EHLDPINVK-----IAELKEALESVTAEQKYLKAREARHRHTNESTRRRVMFYTI 180
Query: 690 IQIIAVTATGTLQVYFLRKLF 752
+ +A LQV ++R+LF
Sbjct: 181 AEYLAFMGASALQVVYIRRLF 201
>08_02_1381 -
26551920-26552053,26552963-26553070,26553154-26553340,
26554107-26554316
Length = 212
Score = 38.7 bits (86), Expect = 0.006
Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Frame = +3
Query: 237 KEDCYFQYVQ-PGATFYASYQVLKGG-------DGMCGFAVRHPNGKIVHPYEWRQSAEY 392
+E+C+ V+ G T + S+ V+K DG+ V+ PNG V + S ++
Sbjct: 32 REECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGV-DLVVKDPNGAQVRDSRDKTSDKF 90
Query: 393 ADQSSSGGYYAVCIDNQFSRFAGKLVNLYLSVIRYDMWEKYAKEVEELDMNIKNFTSSIQ 572
G + C N+ + V+ + V + ++++AK D + I
Sbjct: 91 EFIVQKRGVHRFCFTNKSPYH--ETVDFDVHVGHFSYFDQHAK-----DEHFAPLFEQIA 143
Query: 573 FVERNINDILQYQYHSRARESRDYNLLLDNNIYVLRWSIIQIIAVTATGTLQVYFLRKLF 752
++ + +I Q+ A+ R L + + + ++++ A+ A +QVY LR+LF
Sbjct: 144 KLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKALLESAALIAASVIQVYLLRRLF 203
Query: 753 EVKDNSSK 776
E K +S+
Sbjct: 204 ERKLGTSR 211
>09_04_0676 -
19383757-19383890,19384308-19384415,19384493-19384679,
19384937-19385143
Length = 211
Score = 37.5 bits (83), Expect = 0.014
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 11/191 (5%)
Frame = +3
Query: 237 KEDCYFQYVQ-PGATFYASYQVLKGG-------DGMCGFAVRHPNGKIVHPYEWRQSAEY 392
+E+C+ V G T + S+ V+K DG+ VR PNG +H + S ++
Sbjct: 31 REECFSHNVDYEGDTVHVSFVVIKAETPWHYTEDGV-DLVVRDPNGNQIHDSRDKISDKF 89
Query: 393 ADQSSSGGYYAVCIDNQFSRFAGKLVNLYLSVIRYDMWEKYAKEVEELDMNIKNFTSSIQ 572
G + C N+ + V+ + V + ++++AK+ ++F++ +
Sbjct: 90 EFIVHRRGVHRFCFTNKSPYH--ETVDFDVLVSHFSYYDQHAKD--------EHFSALFE 139
Query: 573 FVERNINDILQYQYHSRARESR-DYNLLLDNNIY--VLRWSIIQIIAVTATGTLQVYFLR 743
+ + + Q+ E++ D +L+ N+ + + + A+ A +QVY L
Sbjct: 140 QIAKLDEALYNIQFEQHWLEAQTDRQAILNENMSRRAVHKAFFESAALIAASVVQVYLLH 199
Query: 744 KLFEVKDNSSK 776
+LFE K +S+
Sbjct: 200 RLFERKLGTSR 210
>03_06_0022 + 31085819-31086305,31086448-31087334
Length = 457
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 202 LPWITKSTSMLGRKIVTFNMF--NPVPLSTPVIRC 300
LPW+T S + GR++V N+F NP S VI C
Sbjct: 185 LPWVTLSGTPDGRRMVIQNVFKTNPTISSAEVIIC 219
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +3
Query: 492 RYDMWEKYAKEVEELDMNIKNFTSSIQFVERNIND---ILQYQYHSRARESRDYNLLLDN 662
+Y M + +K VEEL +I+ + ++F++ ++ IL S A + Y+++L+
Sbjct: 317 QYSMLQLQSKHVEELKADIRATKAGMEFMQMKYSEDINILGRHLFSLAHAASGYHIVLEE 376
Query: 663 N 665
N
Sbjct: 377 N 377
>05_01_0321 +
2535201-2535260,2535366-2535700,2535705-2535849,
2535946-2536140,2536243-2536530,2536849-2537035,
2537260-2537306,2537704-2537796
Length = 449
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +3
Query: 333 VRHPNGKIVHPYEWRQSAEYADQSSSGGYYAVCIDNQFSRFAGKLVNLYLS----VIRYD 500
+ HPNG +HP R+ + +A + YA +F + ++V + ++R+D
Sbjct: 340 ITHPNGTTIHP-SGRECSLHASIDALSSCYADKQGKKFRVWVDRIVASSIGTINWLVRFD 398
Query: 501 MWE 509
WE
Sbjct: 399 KWE 401
>04_01_0359 + 4711289-4713052,4713423-4713950
Length = 763
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 374 PFIWMNYFAIWMTDSEPAHAVTSFQHLITGVESGTG 267
P +W+ F W+ S PA A F H G + G G
Sbjct: 5 PSLWIRVFFSWLLLSLPAAAAADFSH-CGGCDDGDG 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,509,323
Number of Sequences: 37544
Number of extensions: 527031
Number of successful extensions: 1089
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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