Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_F05
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 1.2
02_01_0020 - 127572-127637,127760-127819,127903-128004,128099-12... 30 2.1
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 3.7
08_02_0272 + 15189617-15190276,15190361-15191107 29 4.9
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 29 4.9
05_03_0469 + 14439472-14440905 29 6.5
04_04_1113 - 30986757-30986780,30986781-30987273,30987437-309879... 29 6.5
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 28 8.6
06_01_1082 - 8847795-8848033,8848511-8848724 28 8.6
03_02_0950 + 12661008-12662312,12662403-12662576 28 8.6
01_05_0346 + 21191542-21191783,21191988-21192072,21192159-211924... 28 8.6
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 399 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 503
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>02_01_0020 -
127572-127637,127760-127819,127903-128004,128099-128194,
128649-128756,128849-128899,129018-130118
Length = 527
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +2
Query: 167 DDVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMXLRLPVMD 346
DD+L E+L + + + E +A+ ++ KKG V++E +K L+E T R P+
Sbjct: 310 DDLLIEKL--NSIEKKIEEKLAEL-DHTFGKKGRVLEEEIKDLVEERNSLTEHKRRPMYR 366
Query: 347 KGW 355
KG+
Sbjct: 367 KGF 369
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 467 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 381
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>08_02_0272 + 15189617-15190276,15190361-15191107
Length = 468
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 719 HDVAFVHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSVVF 549
HD++F HG L++P + VDDT + F ++ + L G + EV + VF
Sbjct: 300 HDISFRHGALRIP--------RLAVDDTTEHKLFSLMAFEQLHGAGAN--EVTAYVF 346
>01_01_0777 -
6017131-6017243,6018069-6018339,6018432-6018617,
6018703-6018735,6018827-6018925,6019042-6019281,
6019747-6020064,6020197-6020254,6020333-6020389,
6020577-6020792,6020885-6021000
Length = 568
Score = 29.1 bits (62), Expect = 4.9
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +3
Query: 618 KGSSDDRIIYGDSTADTFKHHWYLEPSMYESDVMFFVYNREYNSVMTLDEDMAANEDREA 797
+ S D R+I + + + H + M +S M + EYN L++D NE +
Sbjct: 427 ENSDDRRVILNNLSQKMNQDHRFSTEVMEKSLQMMHQHFGEYNRCSALNQDNEKNELKAN 486
Query: 798 LGHS 809
GHS
Sbjct: 487 NGHS 490
>05_03_0469 + 14439472-14440905
Length = 477
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 493 VTPKTKPARKSPGS--LPPCWKTTEFTSRSCPP 585
+T T+ AR PG+ +PP W+ T+RS PP
Sbjct: 187 LTAVTEFARGVPGAPTVPPVWEREALTTRSWPP 219
>04_04_1113 -
30986757-30986780,30986781-30987273,30987437-30987959,
30988361-30988615,30988812-30988926,30989026-30989078,
30989213-30989265,30989419-30989473,30989549-30989599,
30989776-30990024,30990122-30990350,30990994-30991305
Length = 803
Score = 28.7 bits (61), Expect = 6.5
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = -1
Query: 348 LSITGRRSXMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTS 169
L+ G+ + ++ S + F +S+ + F+ +LA ++ MTT I+ C S
Sbjct: 347 LAYLGQGAFLIANQNSSEQIFFSSIPSGVFWPVFLIANLAALIASRTMTTAIFQC-LKQS 405
Query: 168 SVLGASVALEASAHTARTKANKVXLILAQWLSL 70
LG L+ HT+R K+ + + W L
Sbjct: 406 IALGCFPRLKI-IHTSRKFMAKIYIPVVNWFLL 437
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 644 DDTVITRTFRVIELQVLFVLGGHDLEVNSVVFQHGGKLPGDFLAGFVFG 498
DDT V+ ++ VLGG D+ V F GG + L GF+FG
Sbjct: 155 DDTTTEDDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCP-LQGFLFG 202
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 681 WYLEPSMYESDVMFFVYNREYNSV 752
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>03_02_0950 + 12661008-12662312,12662403-12662576
Length = 492
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 170 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 271
+VL+ + +GEY+ AIA CS+ L++ K V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444
>01_05_0346 +
21191542-21191783,21191988-21192072,21192159-21192422,
21192518-21192820,21193695-21193799,21193916-21194020,
21194613-21194712,21195614-21195933,21196183-21196359,
21196432-21196560,21196592-21196636,21196851-21197078
Length = 700
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 483 IAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSTEDKQYLKLDNT 617
I F D K+K K K +EN+ + F +M+ D QYL +NT
Sbjct: 354 ILFNDMKEKGVKSGK-KCVLSMENHGIGFLLMAYNDVQYLVPNNT 397
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,162,417
Number of Sequences: 37544
Number of extensions: 488731
Number of successful extensions: 1577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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