Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F01
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    53   7e-08
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    51   2e-07
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   3.7  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    27   3.7  

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 52.8 bits (121), Expect = 7e-08
 Identities = 24/48 (50%), Positives = 37/48 (77%)
 Frame = +2

Query: 266 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 409
           +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH  Q IYTRA
Sbjct: 37  FKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 23/47 (48%), Positives = 36/47 (76%)
 Frame = +2

Query: 266 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 406
           +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I++V QH  Q IYTR
Sbjct: 37  FKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 118 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 216
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 225 YQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 124
           YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,297
Number of Sequences: 5004
Number of extensions: 36504
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)