Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F01
         (919 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...   102   8e-22
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...   102   8e-22
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...   102   8e-22
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...    99   4e-21
AY113416-1|AAM29421.1|  583|Drosophila melanogaster RE16761p pro...    30   5.1  
AE014298-588|AAF45912.2|  583|Drosophila melanogaster CG6414-PA ...    30   5.1  

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score =  102 bits (244), Expect = 8e-22
 Identities = 48/53 (90%), Positives = 52/53 (98%)
 Frame = +2

Query: 266 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 424
           YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 64  YKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116



 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 24/53 (45%), Positives = 25/53 (47%)
 Frame = +3

Query: 75  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPT 233
           MPPKKDAK+SAKQPQ                           LNNQVLFDK T
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKAT 53


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score =  102 bits (244), Expect = 8e-22
 Identities = 48/53 (90%), Positives = 52/53 (98%)
 Frame = +2

Query: 266 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 424
           YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 64  YKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116



 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 24/53 (45%), Positives = 25/53 (47%)
 Frame = +3

Query: 75  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPT 233
           MPPKKDAK+SAKQPQ                           LNNQVLFDK T
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKAT 53


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score =  102 bits (244), Expect = 8e-22
 Identities = 48/53 (90%), Positives = 52/53 (98%)
 Frame = +2

Query: 266 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 424
           YKLITP+VVSERLK+RGSLA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 64  YKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116



 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 24/53 (45%), Positives = 25/53 (47%)
 Frame = +3

Query: 75  MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPT 233
           MPPKKDAK+SAKQPQ                           LNNQVLFDK T
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKAT 53


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score =   99 bits (238), Expect = 4e-21
 Identities = 47/53 (88%), Positives = 51/53 (96%)
 Frame = +2

Query: 266 YKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 424
           YKLITP+VVSERLK+RGSL +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 60  YKLITPSVVSERLKIRGSLDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112



 Score = 33.9 bits (74), Expect = 0.31
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = +3

Query: 87  KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXLNNQVLFDKPT 233
           KDAK+SAKQPQ                           LNNQVLFDK T
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKAT 49


>AY113416-1|AAM29421.1|  583|Drosophila melanogaster RE16761p
           protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 263 CGTSLYSFSXRGFIKQHLVVQLVTNFSFGPLLLLGFAAT 147
           CG+ + SF    F+  H +V +  NF  GP   LGF +T
Sbjct: 141 CGSGISSFYGPDFLLDHDIVLVSANFRLGP---LGFLST 176


>AE014298-588|AAF45912.2|  583|Drosophila melanogaster CG6414-PA
           protein.
          Length = 583

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 263 CGTSLYSFSXRGFIKQHLVVQLVTNFSFGPLLLLGFAAT 147
           CG+ + SF    F+  H +V +  NF  GP   LGF +T
Sbjct: 141 CGSGISSFYGPDFLLDHDIVLVSANFRLGP---LGFLST 176


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,669,513
Number of Sequences: 53049
Number of extensions: 406165
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4505424660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)