Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_F01
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   6.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   6.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   6.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   6.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   9.0  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 118 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRYEKLY 249
           +K+R   K+    +  R    + K ++S +      N  Y+KLY
Sbjct: 57  RKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 118 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRYEKLY 249
           +K+R   K+    +  R    + K ++S +      N  Y+KLY
Sbjct: 57  RKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +1

Query: 118 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRYEKLY 249
           +K+R   K+    +  R    + K ++S +      N  Y+KLY
Sbjct: 57  RKYRETSKERSRDRKEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 109 NSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRYEKL 246
           NS +K+R   K+    +  R    + K ++S        N  Y+KL
Sbjct: 276 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKL 321


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 109 NSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRYEKL 246
           NS +K+R   K+    +  R    + K ++S        N  Y+KL
Sbjct: 287 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKL 332


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 109 NSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRYEKL 246
           NS +K+R   K+    +  R    + K ++S        N  Y+KL
Sbjct: 287 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKL 332


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 109 NSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRYEKL 246
           NS +K+R   K+    +  R    + K ++S        N  Y+KL
Sbjct: 276 NSYRKYRETSKERSRDRTERERSREPKIISSLLNNTIHNNNNYKKL 321


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -2

Query: 279 VISLXLWDFLVQFLIXW 229
           V+ L  W F+V  ++ W
Sbjct: 390 VVCLAFWSFIVSTILLW 406


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,797
Number of Sequences: 438
Number of extensions: 2835
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)