Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_E24
         (1472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.076
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 124 PXPXXXXXGFPXPHPXPGX-GXXPPPPPXP 38
           P P     G P P P PG  G  PPPPP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.7 bits (66), Expect = 0.53
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = -2

Query: 127 PPXPXXXXXGFPXPHPXP----GXGXXPPPPPXP 38
           P  P     G P P P P    G G  PPPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 124 PXPXXXXXGFPXPHPXPGXGXXPPPPP 44
           P P       P P P  G    PPPPP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -2

Query: 127 PPXPXXXXXGFPXPHPXPGXGXXPPPPP 44
           PP P         P P  G    PPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -2

Query: 133 SSPPXPXXXXXGFPXPHPXPGXGXXPPPPPXP 38
           S PP P           P P  G   PPPP P
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,013
Number of Sequences: 5004
Number of extensions: 15508
Number of successful extensions: 78
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 820620036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)