Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_E17
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   2.6  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    27   3.5  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    26   8.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   8.0  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 223 HCREESPILSRRKHYFGGRFELLAWPVFPVRQDS 324
           HCR  SP  +    Y      LLAWP +  + DS
Sbjct: 266 HCRNSSPHDNPILEYLFALVSLLAWPFYRRKLDS 299


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
 Frame = -2

Query: 226 SVIAEYHACVGQMTSAIDPRIFLNFQ------LFVVDVSTHQRHNDQEIQQETSWYSCLG 65
           SVI   H C       I  R FL F            +     H +Q   Q   W SCL 
Sbjct: 178 SVIVFLHCCAYNYGGLIALRFFLGFTESCLLPAMEATMGMFFTHQEQAFLQPVFWISCLS 237

Query: 64  C 62
           C
Sbjct: 238 C 238


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 109 DQEIQQETSWYSCLGC*TRQSQNL 38
           D EIQ    W  C+GC  R + +L
Sbjct: 369 DAEIQCSYGWIECVGCADRSAYDL 392


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 457 SSRLLLNKLNCSAVTK*IIGVTGLKATFVD*ARAAFRFLGESKSA--SLGVLGRQARPGA 284
           S+ +  ++L+C + +  I   T    +F D        L +S+ A  SLG+  R    G+
Sbjct: 152 SNLIETSELSCLSSSPMIRSHTIPSLSFTDQVSTTISTLDKSEQAPSSLGIYYRSPSSGS 211

Query: 283 QISRRNNVCV 254
            I R  +VC+
Sbjct: 212 PIGRTKSVCL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,575
Number of Sequences: 5004
Number of extensions: 51201
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)