Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_E12
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        171   8e-43
02_05_0416 + 28791512-28792012                                        171   8e-43
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858...    31   1.6  
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           29   3.8  
03_05_0954 - 29113938-29114024,29114277-29114444,29115156-291152...    28   8.7  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  171 bits (415), Expect = 8e-43
 Identities = 80/108 (74%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
 Frame = +3

Query: 174 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 350
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 351 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLE 494
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLD 108



 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 34/57 (59%), Positives = 45/57 (78%)
 Frame = +1

Query: 490 LKDVVGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 660
           L DV+ IA+IMRNRSMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 107 LDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  171 bits (415), Expect = 8e-43
 Identities = 80/108 (74%), Positives = 96/108 (88%), Gaps = 1/108 (0%)
 Frame = +3

Query: 174 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 350
           MPPK DP ++  V +R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++T
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 351 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLE 494
           V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLD 108



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 32/57 (56%), Positives = 44/57 (77%)
 Frame = +1

Query: 490 LKDVVGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 660
           L DV+ IA++MR RSMA+ ++G+VKEILGT  SVGCTV+G+ P DL  +I+ G + I
Sbjct: 107 LDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163


>11_04_0079 -
           13284869-13284929,13285518-13285639,13285749-13285820,
           13286048-13286200,13289510-13289709,13289745-13289947,
           13289991-13290181
          Length = 333

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 653 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 561
           +APL   S+RSCG L   + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 330 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 458
           W    + V   V +    + V+P+A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>03_05_0954 -
           29113938-29114024,29114277-29114444,29115156-29115212,
           29115314-29115369,29115463-29115572,29116142-29116310,
           29116418-29116742,29117378-29117442,29117541-29117712,
           29118191-29118484
          Length = 500

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 583 VLCQESLLLSQKGTGPLICFS*SSQCRLHLSREML 479
           V CQ     + +GT P I    +S C+L+LS + L
Sbjct: 413 VQCQRLKFFNLQGTAPTISIDNTSGCQLYLSNDSL 447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,184,100
Number of Sequences: 37544
Number of extensions: 440716
Number of successful extensions: 1112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)