Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_E11
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 73 5e-14
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 69 7e-13
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 54 3e-08
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 50 6e-07
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 33 0.071
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 31 0.28
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 26 6.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.1
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 6.1
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 26 8.1
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 72.9 bits (171), Expect = 5e-14
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 3/128 (2%)
Frame = +3
Query: 264 LFDHEGKRYLDLFGGVVTVSVGNSHPKLNAALKEQIDLIWHTTNLYRHPRIYEYIEKLSS 443
++D + LD G ++ +G+SHP + A +++ + + H + + P + + +LS
Sbjct: 44 VYDEQDNAILDFTSGQMSAILGHSHPDITACIEKNLPKLVHLFSGFLSPPVVQLATELSD 103
Query: 444 KLPDDLNVVYLVNSGTEANDLATILAKAYTGNLDVISLQTSYHGYN---SSLMGLSATQS 614
LPD L+ +++G EAN+ A +AK YT + ++ +S+HG +SL +A +
Sbjct: 104 LLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASLTFAAARRG 163
Query: 615 YRMNLPGT 638
Y LPG+
Sbjct: 164 YGPALPGS 171
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 69.3 bits (162), Expect = 7e-13
Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Frame = +3
Query: 231 PVLLHQGHMQWLFDHEGKRYLDLFGGVVTVSVGNSHPKLNAALKEQIDLIWHTTNLYRHP 410
PV+ +G +LFD EG++Y+D GV S+G++HP++ +Q + H++NL+ +
Sbjct: 55 PVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLAADQCSKLVHSSNLFYNE 114
Query: 411 RIYEYIEKLSSKLPDDLNV-----VYLVNSGTEANDLATILA------KAYTGNLDVISL 557
E +++ L + + ++ N GTEAN+ A A K G ++
Sbjct: 115 PAIELSNVINNSLAKNSGIAGPTKIFFANCGTEANETALKFARKAAFEKYGEGKSQIVYF 174
Query: 558 QTSYHGYNSSLMGLSATQSYR 620
S+HG + + ++A Y+
Sbjct: 175 NNSFHGRSLGSLSITANPKYK 195
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 54.0 bits (124), Expect = 3e-08
Identities = 35/115 (30%), Positives = 53/115 (46%)
Frame = +3
Query: 231 PVLLHQGHMQWLFDHEGKRYLDLFGGVVTVSVGNSHPKLNAALKEQIDLIWHTTNLYRHP 410
P+ + G+ L D +G Y D + G+S+P + AL + D I +
Sbjct: 52 PIFIEAGYGSKLRDVDGHEYTDFLNELTAGIYGHSNPVIKKALMQGFDEIGISLGGTTTC 111
Query: 411 RIYEYIEKLSSKLPDDLNVVYLVNSGTEANDLATILAKAYTGNLDVISLQTSYHG 575
+ Y E L S+ + + NSGTEAN A I A+ +TG VI++ YHG
Sbjct: 112 EL-NYAEALKSRFLS-IEKIRFCNSGTEANITAIIAARKFTGKRAVIAMHGGYHG 164
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 49.6 bits (113), Expect = 6e-07
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Frame = +3
Query: 168 EQLEHLKSKHMPPAIPNSYKKPVLLHQGHMQWLFDHEGKRYLDLFGGVVTVSVGNSHPKL 347
EQ+E L++++ A N + PV + ++D EG+ YLD V+ G+ HPK+
Sbjct: 14 EQIEVLENEY---AAHNYHPLPVCFSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKI 70
Query: 348 NAALKEQIDLIWHTTNLYRHPRIYEYIEKLSSKLPDDLNVVYLVNSGTEANDLATILAKA 527
AL EQ + ++ + + + + + ++ +V +N+G EA + A LA+
Sbjct: 71 IEALVEQAQRVTLSSRAFYNDKFGPFAKYITEYF--GYEMVIPMNTGAEAVETACKLARL 128
Query: 528 Y--------TGNLDVISLQTSYHGYNSSLMGLSATQSYRMN 626
+ T ++S ++HG ++ +S R N
Sbjct: 129 WGYKAKKIPTDEAIILSCVDNFHGRTMGIISMSTDPDARDN 169
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 32.7 bits (71), Expect = 0.071
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 6/123 (4%)
Frame = +3
Query: 270 DHEGKRYLDLFGGVVTVSVGNSHPKLNAALKEQIDLIWHTTNLYRHPRIYEYIEKLSSKL 449
D +G +LDL GGV V+VGN++ + L++ D + + + + + L
Sbjct: 85 DEKGTEHLDLIGGVGVVTVGNNNQYVWDCLQKCFDAKLYMMGAISYRNLAAAFGRNMALL 144
Query: 450 P--DDLNVVYLVNSGTEAND--LATI-LAKAYTGN-LDVISLQTSYHGYNSSLMGLSATQ 611
L + G EAN+ + I LA Y N +S S+HG + + L +
Sbjct: 145 SPGQKLTRTWTATGGAEANEGVIKLIRLATRYKPNKKKFLSTLNSFHGKTTGAVFLGGKE 204
Query: 612 SYR 620
++
Sbjct: 205 KWQ 207
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 781 ELLGNSVPAGRVXAFFAESIQGAGGVVQFPKG 876
E L ++ +G +F E IQG GGV+ P G
Sbjct: 226 EALQVALSSGMYRSFIVEPIQGEGGVIVPPPG 257
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 632 RYRRDFITRHIQIRTEGAGAAAETPFRRWPARARVPANALAPKNTF-INSTSS*VILYQP 808
++R+ FI IQ+ G P P R V + +AP + I+ST + +++ P
Sbjct: 172 KFRKAFIDHPIQVTDHFLGLILTNPDYIAPGRGHVILSKVAPMVLYPISSTEARILINYP 231
Query: 809 AEXQRSSRNLSRVLVEWC 862
+ L + ++E C
Sbjct: 232 GKNLPPMETLKKYVLESC 249
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +3
Query: 411 RIYEYIEKLSSKLPDD---LNVVYLVNSGTEANDLATILAKAY 530
+IYE+I++L ++ DD + V+Y +S E A +++K Y
Sbjct: 36 KIYEFIDQLWPEISDDVTKIEVMYEDHSFPERELAALVVSKVY 78
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 420 HIFLDAGTSSSCAILN-RFVL*ELRLASDDYFQLRQ 316
H+FLDA S C +LN ++L + L+ D +Q+ +
Sbjct: 284 HLFLDATAFSCCQMLNLPWILSKSLLSGTDAYQIER 319
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 722 ARARVPANALAPKNTFINSTSS*VILYQPAEXQRSSRNLSR 844
A +P N P+NT N++SS P + RN SR
Sbjct: 581 AHGGMPVNMRGPRNTSRNNSSSEFNAQIPMNLRNGPRNASR 621
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 222 YKKPVLLHQGHMQWLFDHEGKRYLDLFG 305
Y PV+ H+ + L + +GKR++D+ G
Sbjct: 413 YDGPVIAHKIKQEILAELKGKRWVDIIG 440
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,040,544
Number of Sequences: 5004
Number of extensions: 93196
Number of successful extensions: 275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -