Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_E09
         (908 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical p...    48   9e-06
AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    29   4.6  
Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical p...    29   6.1  
Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical
           protein C18E9.2a protein.
          Length = 364

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 21/53 (39%), Positives = 31/53 (58%)
 Frame = +1

Query: 238 VAKWLKANVPTKKTKFLNHHVEYFTGTKAVDALVDFKMGDRQESSVHHKNRSD 396
           +AK+++ N PT  T F  + V YF+G KAVD L + K G++ +     K R D
Sbjct: 24  IAKYIRFNCPTATTMFEGNEVHYFSGNKAVDTLWESKYGNKAKKDAMFKTRDD 76


>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 143 NIQWLIKERLKNAKMTSGNLQSLRSQRAKSTQSRN 247
           +I+W +  R+KN K T G  Q  R +  KS Q  N
Sbjct: 48  DIRWTVLYRIKNKKGTHGQEQVTRKKTKKSVQVVN 82


>Z83224-1|CAB05720.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 308 SQVQRL*MPWLTSKWATGKNPAFTTRIEVT 397
           SQ+  L   W T+KW++  N +F  ++E T
Sbjct: 575 SQMDELVATWKTTKWSSNSNESFWEKMEKT 604


>Z79754-14|CAB02102.1|  994|Caenorhabditis elegans Hypothetical
           protein F25H2.13 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 308 SQVQRL*MPWLTSKWATGKNPAFTTRIEVT 397
           SQ+  L   W T+KW++  N +F  ++E T
Sbjct: 575 SQMDELVATWKTTKWSSNSNESFWEKMEKT 604


>Z77655-7|CAB01133.2|  221|Caenorhabditis elegans Hypothetical
           protein C56A3.4 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -1

Query: 317 VPVKYSTW*FRNFVFFVGTFALSHFATAYSSLVGFSDSGGSPKSSLRFLVFLLSAIV 147
           +PV+ + W F NF  F         AT   +L  +     +P+ S  F+ ++L  +V
Sbjct: 36  IPVRITNWFFTNFPVFSSLSLFLFIATVLITLYVYRRLSSTPRES--FISYILYTVV 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,510
Number of Sequences: 27780
Number of extensions: 234351
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)