Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_E04
(877 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b ... 83 3e-16
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 78 7e-15
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 38 0.012
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 35 0.066
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 34 0.12
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 33 0.27
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 31 0.82
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 31 0.82
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 31 0.82
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 31 0.82
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 31 0.82
U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protei... 31 1.1
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical pr... 30 2.5
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 30 2.5
Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical p... 29 3.3
Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen prot... 29 3.3
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 29 5.8
AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical... 29 5.8
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 29 5.8
Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 28 7.6
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 28 7.6
U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein ... 28 7.6
U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein. 28 7.6
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b
homolog protein 2 protein.
Length = 305
Score = 82.6 bits (195), Expect = 3e-16
Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 4/179 (2%)
Frame = +2
Query: 233 ARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGL 412
ARP+ P K RL +P+ WF F TGV+GPY F GL +L +KE++V E + + +
Sbjct: 99 ARPMY--PPKSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQGHMTV 156
Query: 413 SLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQG- 589
++ + G K+ L + N + +G Q + L++A+E +KT + +
Sbjct: 157 GWILFYLLVTRTAGYKIDQGLYNGYQERVN-FFKGLIQ--EDLKEAVEFKKTSAKQTESL 213
Query: 590 ---QELLIQAKKENVLLQLEAAYRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMGRL 757
+E A KE++ LQLEA YR+ + TE+KRR+DY E + R+ ++ + +L
Sbjct: 214 NSIKESYPTALKESMALQLEATYRKNVQSVATELKRRIDYLKETEESKARVEREQLLKL 272
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 78.2 bits (184), Expect = 7e-15
Identities = 51/172 (29%), Positives = 90/172 (52%), Gaps = 4/172 (2%)
Frame = +2
Query: 254 PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVY 433
P K RL +P+ WF F TG +GPY F GL +L +KE++V E + + + ++
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYL 161
Query: 434 VAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWR----AQGQELL 601
+ G K+ A L K+ + + +G Q + L++A++ KT + A +E +
Sbjct: 162 LVSRTAGYKIDAGLYKDYQERVG-FFKGLIQ--EDLKEAVDFRKTSAAQTASFAALKEGM 218
Query: 602 IQAKKENVLLQLEAAYRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMGRL 757
+ K+++ LQLEAAYR+ + E+KRR++Y E + R + + +L
Sbjct: 219 PTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKETEETKARFERDQLLKL 270
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 568 GAVARAGTGAPHP-GQEGERAPAARGRLQGEAHVRLHRG-EAASGLPAREVERGAPSRPE 741
G + G+GAP P G EG PA + G+ + G E +G P ++ E GAP +
Sbjct: 194 GKNGQRGSGAPGPAGPEGPAGPAGQDGAPGQDGAPGNAGSEGPAGAPGKDGEAGAPGQDG 253
Query: 742 AHGSTGI 762
G GI
Sbjct: 254 EAGGEGI 260
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 35.1 bits (77), Expect = 0.066
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +1
Query: 562 EDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLHRG-EAASGLPAREVERGAPSRP 738
+ GA AG PG GE+ A GEA + G E +G P ++ E GAP +
Sbjct: 156 QPGAPGNAGQDGA-PGAAGEQGDAGAAGQDGEAGAPGNAGSEGPAGAPGKDGEAGAPGQD 214
Query: 739 EAHGSTGI 762
G GI
Sbjct: 215 GEAGGEGI 222
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 34.3 bits (75), Expect = 0.12
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 544 GRN*GREDGAVARAGTGAPH--PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVE 717
GRN EDGA G P PGQ G+ P RG GE L G+A G
Sbjct: 164 GRN--GEDGAPGPQGPSGPPGPPGQPGQ--PGQRGP-PGEPGALLPGGDAPPGPSGPPGR 218
Query: 718 RGAPSRPEAHGSTG 759
GAP +P GS G
Sbjct: 219 PGAPGQPGKAGSPG 232
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 33.1 bits (72), Expect = 0.27
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +1
Query: 562 EDGAVARAGTGAP----HPGQEGERAPAARGRLQGEAHVRLHRGEAAS-GLPAREVERGA 726
E+G GAP PGQ G+R PA G + +G + G P R+ + G
Sbjct: 198 ENGNNGEPQPGAPGEPGQPGQPGQRGPAGEPGKDGSPGGQGEKGASGEPGQPGRDGQPGH 257
Query: 727 PSRPEAHGSTG 759
P +P G G
Sbjct: 258 PGQPGKDGRPG 268
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 31.5 bits (68), Expect = 0.82
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +1
Query: 562 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSR 735
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1026 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1085
Query: 736 PEAHGSTG 759
P G G
Sbjct: 1086 PGKAGRQG 1093
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG++GE PAAR +G+A + GL + G P P G TG+
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGL-----PGQPGLRGPQGPSGLPGVPGFKGETGL 1068
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG +G AP +G G VR G++ +GLP +RGAP G G+
Sbjct: 469 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGV 518
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 604 PGQEGERA----PAARGRLQGEAHVRLHRGE----AASGLPAREVERGAPSRPEAHGSTG 759
PGQ+GE P A G L+GE+ + G A+G+P + E G P P G G
Sbjct: 1292 PGQKGESGLSGLPGAPG-LKGESGMPGFPGAKGDLGANGIPGKRGEDGLPGVPGRDGQPG 1350
Query: 760 I 762
I
Sbjct: 1351 I 1351
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 31.5 bits (68), Expect = 0.82
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +1
Query: 562 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSR 735
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1025 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1084
Query: 736 PEAHGSTG 759
P G G
Sbjct: 1085 PGKAGRQG 1092
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG++GE PAAR +G+A + GL + G P P G TG+
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGL-----PGQPGLRGPQGPSGLPGVPGFKGETGL 1067
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG +G AP +G G VR G++ +GLP +RGAP G G+
Sbjct: 468 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGV 517
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 604 PGQEGERA----PAARGRLQGEAHVRLHRGE----AASGLPAREVERGAPSRPEAHGSTG 759
PGQ+GE P A G L+GE+ + G A+G+P + E G P P G G
Sbjct: 1291 PGQKGESGLSGLPGAPG-LKGESGMPGFPGAKGDLGANGIPGKRGEDGLPGVPGRDGQPG 1349
Query: 760 I 762
I
Sbjct: 1350 I 1350
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 31.5 bits (68), Expect = 0.82
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +1
Query: 562 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSR 735
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1025 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1084
Query: 736 PEAHGSTG 759
P G G
Sbjct: 1085 PGKAGRQG 1092
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG++GE PAAR +G+A + GL + G P P G TG+
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGL-----PGQPGLRGPQGPSGLPGVPGFKGETGL 1067
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG +G AP +G G VR G++ +GLP +RGAP G G+
Sbjct: 468 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGV 517
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 604 PGQEGERA----PAARGRLQGEAHVRLHRGE----AASGLPAREVERGAPSRPEAHGSTG 759
PGQ+GE P A G L+GE+ + G A+G+P + E G P P G G
Sbjct: 1291 PGQKGESGLSGLPGAPG-LKGESGMPGFPGAKGDLGANGIPGKRGEDGLPGVPGRDGQPG 1349
Query: 760 I 762
I
Sbjct: 1350 I 1350
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 31.5 bits (68), Expect = 0.82
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +1
Query: 562 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSR 735
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1026 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1085
Query: 736 PEAHGSTG 759
P G G
Sbjct: 1086 PGKAGRQG 1093
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG++GE PAAR +G+A + GL + G P P G TG+
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGL-----PGQPGLRGPQGPSGLPGVPGFKGETGL 1068
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG +G AP +G G VR G++ +GLP +RGAP G G+
Sbjct: 469 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGV 518
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 604 PGQEGERA----PAARGRLQGEAHVRLHRGE----AASGLPAREVERGAPSRPEAHGSTG 759
PGQ+GE P A G L+GE+ + G A+G+P + E G P P G G
Sbjct: 1292 PGQKGESGLSGLPGAPG-LKGESGMPGFPGAKGDLGANGIPGKRGEDGLPGVPGRDGQPG 1350
Query: 760 I 762
I
Sbjct: 1351 I 1351
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 31.5 bits (68), Expect = 0.82
Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Frame = +1
Query: 562 EDGAVARAGT--GAPHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSR 735
E G AR G A PGQ G R P L G + G G P + E+G P
Sbjct: 1062 EAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLPGYGQPGQPGEKGLPGI 1121
Query: 736 PEAHGSTG 759
P G G
Sbjct: 1122 PGKAGRQG 1129
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG++GE PAAR +G+A + GL + G P P G TG+
Sbjct: 1057 PGEKGEAGPAARDGQKGDAGL-----PGQPGLRGPQGPSGLPGVPGFKGETGL 1104
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTGI 762
PG +G AP +G G VR G++ +GLP +RGAP G G+
Sbjct: 505 PGLDG--APGRKGE-NGLPGVRGPPGDSLNGLPGAPGQRGAPGPNGYDGRDGV 554
Score = 28.3 bits (60), Expect = 7.6
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Frame = +1
Query: 604 PGQEGERA----PAARGRLQGEAHVRLHRGE----AASGLPAREVERGAPSRPEAHGSTG 759
PGQ+GE P A G L+GE+ + G A+G+P + E G P P G G
Sbjct: 1328 PGQKGESGLSGLPGAPG-LKGESGMPGFPGAKGDLGANGIPGKRGEDGLPGVPGRDGQPG 1386
Query: 760 I 762
I
Sbjct: 1387 I 1387
>U40060-1|AAA81141.1| 341|Caenorhabditis elegans Collagen protein
172, isoform a protein.
Length = 341
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 589 TGAP-HPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTG 759
TG P PGQ+G P LQG+ +GE G+P + G P RP G G
Sbjct: 202 TGPPGFPGQKGPNGPRGSPGLQGQDG---KKGE--QGMPGPQGPTGRPGRPGPKGPKG 254
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 544 GRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLHRG-EAASGLPAREVER 720
GRN + G+ G PGQ G R PA + G +G G P R+ +
Sbjct: 198 GRNGEPQPGSPGEPG----RPGQPGSRGPAGQPGKDGAQGGPGEKGANGEPGQPGRDGQP 253
Query: 721 GAPSRPEAHGSTG 759
G P +P G G
Sbjct: 254 GRPGQPGRDGHPG 266
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical
protein F52B11.4 protein.
Length = 304
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +1
Query: 592 GAPH-PGQEGER-APAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEA 744
GAP PG +G+ AP A G+ G + ASG P + GAP +P A
Sbjct: 159 GAPGAPGPQGDAGAPGAPGQGSGAGAPGPAGPKGASGAPGNPGQAGAPGQPGA 211
>Z75552-4|CAA99942.1| 624|Caenorhabditis elegans Hypothetical
protein W04D2.4 protein.
Length = 624
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 584 ARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP*PTVTVR 405
+R P S+ ++ + G + + RS ++PT I+ + H P P V V
Sbjct: 264 SREGIPKSIEVWEEELIDKVGIEWPPVSMRSPHRFTEPRKPTTTEIAIQEHWPRPRVFVG 323
Query: 404 SNIRAPLHRFP 372
N R L FP
Sbjct: 324 KNRRDHLMAFP 334
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Frame = +1
Query: 556 GREDGAVARAGTGAPH-PGQ----EGERAPAARGRLQGEAHVRLHRGEAASGLPAR---E 711
GR + GAP PGQ G PA G + H G+A S LP +
Sbjct: 250 GRSGQPGSNGNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPGPQ 309
Query: 712 VERGAPSRPEAHGSTG 759
+ GAP +P A G G
Sbjct: 310 GDAGAPGQPGAPGQQG 325
>Z70284-20|CAA94286.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 373 LAAQVCCQTHTKSVRTRNTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 227
LAA+ C T +V+ + V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>Z70271-8|CAA94238.2| 543|Caenorhabditis elegans Hypothetical
protein W08D2.8 protein.
Length = 543
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 373 LAAQVCCQTHTKSVRTRNTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 227
LAA+ C T +V+ + V E E ++ K+ WL+P SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350
>Z54237-4|CAN86899.1| 297|Caenorhabditis elegans Hypothetical
protein T11B7.3a protein.
Length = 297
Score = 29.5 bits (63), Expect = 3.3
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +1
Query: 562 EDGAVARAGT-GAPHPGQEGERAPAAR-GR--LQGEAHVRLHRGEAAS-GLPAREVERGA 726
+DGA G G GQ G P R G+ + GE + GE S G+P RGA
Sbjct: 195 QDGAPGHPGADGQRQRGQPGPPGPPGRPGKVGINGEPGQKGIDGENGSEGIPGVPGPRGA 254
Query: 727 PSRPEAHGSTG 759
P +P G G
Sbjct: 255 PGQPGTIGVPG 265
>Z49967-4|CAA90250.1| 287|Caenorhabditis elegans Hypothetical
protein F54C9.4 protein.
Length = 287
Score = 29.5 bits (63), Expect = 3.3
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Frame = +1
Query: 562 EDGAVARAGT----GAPH-PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGA 726
+DG + G G P PG +GE + GE + +G G P R+ + G
Sbjct: 204 QDGTIGGPGLPGQPGTPGWPGSQGEPGKNGDSGVDGEQGPQGPQGP--DGQPGRDADNGQ 261
Query: 727 PSRPEAHGSTGIVSN 771
P P GS G +N
Sbjct: 262 PGLPGKDGSIGPDAN 276
>AF043700-2|AAB97570.1| 283|Caenorhabditis elegans Collagen protein
49 protein.
Length = 283
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/74 (32%), Positives = 30/74 (40%)
Frame = +1
Query: 541 GGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVER 720
G R + G +A G A PG +G P QGE V G A G P R+ E
Sbjct: 195 GPRGQAGQPGTIAIVGL-AGRPGPQG---PLGEPGAQGEPGVDGKDG--ALGAPGRKAEN 248
Query: 721 GAPSRPEAHGSTGI 762
G P + G G+
Sbjct: 249 GRPGKRGKDGVAGV 262
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 29.1 bits (62), Expect = 4.4
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Frame = +1
Query: 562 EDGAVARAGTGAPHPGQEGERAP------AARGRLQGEAHVRLHRGEAASGLPAREVERG 723
+ G A G AP PG G + P + R G+ H G P RG
Sbjct: 171 QPGRPATGGGAAPRPGPPGPKGPRGAPGNSGRAGAPGQPGNDAHGYGGGVGAPGPAGPRG 230
Query: 724 APSRPEAH-GSTG 759
AP P H GS+G
Sbjct: 231 APG-PAGHPGSSG 242
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +2
Query: 470 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQ----WRAQGQELLIQAKKENVLLQL 637
W DK E +W + +T E I+ E E W+ +++L + K+EN LL+L
Sbjct: 447 WSDKRNEENAIKWKQ---ETDNIPEVVIKNEDDETDVLYWKLSDEDVLERCKEENELLKL 503
Query: 638 EAAYRERL 661
+ +L
Sbjct: 504 DLLTEHQL 511
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 479 KEVEATENEWNEGRNQTVKALEDAIE-GEKTEQWRAQGQELLIQAKKENVLLQLEAAYRE 655
KE E + E + + + + E + E+ ++ R +E+ ++ K E ++LEA RE
Sbjct: 440 KEEERKKKEEEDEKRRKAEESERVRKLKEEEKRKRVLEEEMEMKRKNEEAKIKLEAEMRE 499
Query: 656 RLMYAYTEVKRRLDYQLEKSNVERRLAQKHMGRL 757
+ A E+KRR EKS ++L ++ ++
Sbjct: 500 KAEQA--EIKRR----EEKSRALKKLQKEETNKM 527
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = -3
Query: 596 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRPTLVRISRELHTP*PT 417
+P P R +PS PQ S GS RS R R P +R + R P+
Sbjct: 448 SPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSPRRRRSPS 507
Query: 416 VTVRSNIRAPLHRFP 372
+ RS P R P
Sbjct: 508 SSSRSRSPPPPPRRP 522
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 556 GREDGAVARAGTG-APHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPS 732
G + A R G A PGQ G AP G+ G R H SG P + GAP
Sbjct: 165 GSQGPAGPRGPAGDAGAPGQVG--APGNPGQA-GRGGQRSHGLPGPSGAPGPQGPSGAPG 221
Query: 733 RPEAHGSTG 759
+P G G
Sbjct: 222 QPGQSGGQG 230
>AL132904-25|CAB81956.2| 434|Caenorhabditis elegans Hypothetical
protein Y111B2A.5a protein.
Length = 434
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Frame = +2
Query: 482 EVEATENEWNEGRNQT-VKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE---AAY 649
E + TE+E R++ VK LED I GE+ E+ A+ + N + L+ A
Sbjct: 189 EEKLTESELKTQRSEEKVKNLEDFIVGERMEEAEAEAEAAADGGGARNEVSHLKRYIADL 248
Query: 650 RERLMYAYTEVKRRLDYQLEKSNVERRLAQ 739
+ +L E+K + +L+++N ++ Q
Sbjct: 249 QSKLSTMEEELKVLREQKLDENNEATQVRQ 278
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/74 (32%), Positives = 29/74 (39%)
Frame = +1
Query: 538 TGGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVE 717
+GGR G AG+ PGQ G P + G G R ASG P +
Sbjct: 163 SGGRGPPGPRGPAGDAGS----PGQPGH--PGSPGN-PGRGGQRSRGTPGASGRPGPQGP 215
Query: 718 RGAPSRPEAHGSTG 759
GAP +P G G
Sbjct: 216 AGAPGQPGRSGGAG 229
>Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical
protein K08C7.4 protein.
Length = 194
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 523 PNRESTGGRN*GREDG--AVARAGTGAPHPGQEGERAPAARGRLQGEA 660
P R + G R+ +E G +V + A ++ ERAP+ARGR Q A
Sbjct: 87 PRRSTRGKRSYDQETGGRSVRKVVKKAKEVNKKPERAPSARGRGQKPA 134
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTG 759
PGQ+G G+ ++ RG+ G P R+ G P RP G G
Sbjct: 1130 PGQQGRSGDNGYPGAPGQPGIKGPRGD--DGFPGRDGLDGLPGRPGREGLPG 1179
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTG 759
PGQ+G G+ ++ RG+ G P R+ G P RP G G
Sbjct: 1387 PGQQGRSGDNGYPGAPGQPGIKGPRGD--DGFPGRDGLDGLPGRPGREGLPG 1436
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +1
Query: 604 PGQEGERAPAARGRLQGEAHVRLHRGEAASGLPAREVERGAPSRPEAHGSTG 759
PGQ+G G+ ++ RG+ G P R+ G P RP G G
Sbjct: 1386 PGQQGRSGDNGYPGAPGQPGIKGPRGD--DGFPGRDGLDGLPGRPGREGLPG 1435
>U88311-7|AAB42348.1| 1173|Caenorhabditis elegans Lethal protein 502
protein.
Length = 1173
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +2
Query: 467 AWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAA 646
A + ++ E + NE Q KAL++ E +Q A+ + + K + QLE A
Sbjct: 571 AEIKRDYELLQTRENEKSVQLKKALDERKENGAYQQSVAKATDAEWERKMQFYEKQLEHA 630
Query: 647 YRERLMYAYTEVKRRLDYQLEKSNVERRLA 736
ER E ++R + ++S V R+LA
Sbjct: 631 NDER----KREEQKRTAAEFDQSRVARKLA 656
>U85515-1|AAB42081.1| 1173|Caenorhabditis elegans LET-502 protein.
Length = 1173
Score = 28.3 bits (60), Expect = 7.6
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +2
Query: 467 AWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAA 646
A + ++ E + NE Q KAL++ E +Q A+ + + K + QLE A
Sbjct: 571 AEIKRDYELLQTRENEKSVQLKKALDERKENGAYQQSVAKATDAEWERKMQFYEKQLEHA 630
Query: 647 YRERLMYAYTEVKRRLDYQLEKSNVERRLA 736
ER E ++R + ++S V R+LA
Sbjct: 631 NDER----KREEQKRTAAEFDQSRVARKLA 656
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +2
Query: 479 KEVEATENEWNEGRNQTVKALEDA-IEGEKT----EQWRAQGQELLIQAKK 616
KE+EA +W + + K L + +E +T E+W+ + QE+ IQ K+
Sbjct: 250 KEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQ 300
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,891,967
Number of Sequences: 27780
Number of extensions: 394748
Number of successful extensions: 1730
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1711
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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