Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_E03
         (1323 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.34 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.34 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.34 

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.5 bits (73), Expect = 0.34
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 533 QHPPNQXXPXPXPXXXTPPXSRXXRPRXPPXXXS-PPRRSXXPXTP 667
           Q PP    P P P   +PP +    P  PP   S PP R+  P  P
Sbjct: 230 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +2

Query: 539 PPNQXXPXPXPXXXTPPXSRXXR-PRXPPXXXSPPRRSXXP 658
           PP    P P P   +PP  R    P  PP   SPP  S  P
Sbjct: 274 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 314



 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = +2

Query: 539 PPNQXXPXPXPXXXTPPXSRXXRPRXPPXXXS-PPRRSXXPXTP 667
           PP      P P   +PP      P  PP   S PP R+  P  P
Sbjct: 257 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.5 bits (73), Expect = 0.34
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 533 QHPPNQXXPXPXPXXXTPPXSRXXRPRXPPXXXS-PPRRSXXPXTP 667
           Q PP    P P P   +PP +    P  PP   S PP R+  P  P
Sbjct: 251 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +2

Query: 539 PPNQXXPXPXPXXXTPPXSRXXR-PRXPPXXXSPPRRSXXP 658
           PP    P P P   +PP  R    P  PP   SPP  S  P
Sbjct: 295 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 335



 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = +2

Query: 539 PPNQXXPXPXPXXXTPPXSRXXRPRXPPXXXS-PPRRSXXPXTP 667
           PP      P P   +PP      P  PP   S PP R+  P  P
Sbjct: 278 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.34
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 533 QHPPNQXXPXPXPXXXTPPXSRXXRPRXPPXXXS-PPRRSXXPXTP 667
           Q PP    P P P   +PP +    P  PP   S PP R+  P  P
Sbjct: 236 QAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281



 Score = 31.5 bits (68), Expect = 1.4
 Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +2

Query: 539 PPNQXXPXPXPXXXTPPXSRXXR-PRXPPXXXSPPRRSXXP 658
           PP    P P P   +PP  R    P  PP   SPP  S  P
Sbjct: 280 PPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPP 320



 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = +2

Query: 539 PPNQXXPXPXPXXXTPPXSRXXRPRXPPXXXS-PPRRSXXPXTP 667
           PP      P P   +PP      P  PP   S PP R+  P  P
Sbjct: 263 PPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,778,345
Number of Sequences: 27780
Number of extensions: 96092
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3704777368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)