Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_E01
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   6.1  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   8.1  

>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = -2

Query: 671 GQLVGELVPLQKIH*QHFARSLLLRSAYNPRHPSHRHRLYQHQRGDHFSFHLAGSHLQRL 492
           G++  E  PL++   Q  +RSLLL  + N    ++ H    + +  +F      +H+Q +
Sbjct: 295 GKVFRERKPLEEFAPQDISRSLLLAISNNIGQIAYLHAQKHNVQNIYFGGSFIRNHVQTM 354

Query: 491 ENYHRYQYAL 462
              H   YA+
Sbjct: 355 ---HTLTYAI 361


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 781 SRTXKGXSQVLNASFIIVDGFRMRARDPIPSRICNKKGS 665
           +R  KG   +L  S +I D F+   R+ IP R+ + KGS
Sbjct: 27  ARVGKGGPVLLQDSHLI-DVFQHFDRERIPERVVHAKGS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,971
Number of Sequences: 5004
Number of extensions: 61635
Number of successful extensions: 192
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)