Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_D23
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    28   1.5  
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    27   4.7  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   4.7  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   6.2  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   6.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   8.2  

>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 381 NDLLDNTLSEGKRTHIQLQLAVDKRASG 464
           NDL D+  SEG+ TH+  Q A +  A G
Sbjct: 46  NDLSDSADSEGESTHVDEQQAANGAADG 73


>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 195 HNVMVEPCGEGPIFCALKKNKPYSI 269
           H ++ +P   GP+ C L+K +  S+
Sbjct: 132 HPILADPKSRGPLICKLRKEQEISL 156


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 237 CALKKNKPYSISLDVTPHFSANKLHAVIKGDVQNQNTFSTTFTRAAEYNDLLDNTLSEGK 416
           CA KK   +  SL  +P+ +  +L +    +  ++   STT  R   +   L   +  GK
Sbjct: 237 CASKKETLHIFSLHGSPN-TIRQLTSEEPYEEASEFKSSTTEPRQTHWKRKLLKLIDSGK 295

Query: 417 RTHIQLQL 440
           R H ++QL
Sbjct: 296 RAHWRIQL 303


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 254 ILLESAEDRAFATRFNHHVMKRYTMKRPHLCI 159
           I+L+ A +R  AT     +MKR   +RP L I
Sbjct: 194 IILDEAHERTLATDILMGLMKRLATRRPDLKI 225


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 295 LRINCTQL*RETSKTKTLSRLPSREQQSTMTYWTI 399
           L+INC++L  ++   + +SR+     +S + +WT+
Sbjct: 466 LQINCSRLYAKSFGRQLVSRIDFEAARSLINHWTV 500


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 178 SVHISAFXLEYKFALNKSVIQNQNKTKYGVHVSVGAVVLLKRPKVLRN 35
           S HIS+   E   +++ S + N NKT      S+  +  + RPK+L N
Sbjct: 166 SAHISSSDHEKSSSVSLSALNNYNKTTDIKARSLDRLSDMTRPKLLLN 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,628
Number of Sequences: 5004
Number of extensions: 50230
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)