Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_D21
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.09 |||ER to Golgi transport protein Yos1|Schizosaccharo...    56   9e-09

>SPAC19A8.09 |||ER to Golgi transport protein
           Yos1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 81

 Score = 55.6 bits (128), Expect = 9e-09
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
 Frame = +2

Query: 176 MLTLWNLFEATLLCLNAVCVLHEERFMQKIGWGANTQTQGFED-QSSMKFQILNLVRSIR 352
           M    N+   TLL LNAV +L E+RF+ +IGW + +   GF D Q ++K +IL+L+R+IR
Sbjct: 1   MFGFGNILYVTLLLLNAVAILSEDRFLGRIGW-SQSAALGFGDRQDTIKSRILHLIRAIR 59

Query: 353 TV 358
           TV
Sbjct: 60  TV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,288
Number of Sequences: 5004
Number of extensions: 37094
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)